Difference between revisions of "Part:BBa K1031620"

 
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<partinfo>BBa_K1031620 short</partinfo>
 
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NahF-TT
 
NahF-TT
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NahF is a 50.8 KDa protein functioning as salicylaldehyde dehydrogenase to transform salicylaldehyde into salicylic acid (salicylate) using NAD+ (Fig. 7). It is encoded in the naphthalene degradation plasmid from Pseudomonas putida, in which the bacterial oxidation of naphthalene has been extensively investigated. Plasmid pDTG1, NAH7 and pND6-1 identified in different P. putida strains all act to degrade naphthalene and share high identity in amino acid sequences.
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<img src="https://static.igem.org/mediawiki/igem.org/8/8b/Peking2013_Plugin_fig7.jpg"/>
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'''Fig. 7''' Biochemical reaction catalyzed by enzyme NahF: Salicylaldehyde is transformed into salicylic acid (salicylate) accompanied by the reduction of NAD+ to NADH.
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NahF from plasmid NAH7 is mostly widely studied. It has a wide range of substrates, including salicylaldehyde, 5-chloro-salicylaldehyde, 3-nitro-benzaldehyde, 2-methoxy-benzaldehyde etc. and can be activated to 140.3% enzyme activity in the presence of Fe2+ [12]. The wide scope of substrates makes it a commendable candidate to be an Adaptor since many aldehydes can be transformed to the corresponding acids that are detected by NahR biosensor (for salicylates) or biosensor XylS (for benzoates).
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NahF has been expressed in E. coli and its ability to catalyze the reaction in vitro and in vivo has been proved [13-14]. However, the reaction efficiency of E. coli was only about 3% of that of P. putida possibly due to the difference of expression regulation in these two bacteria [13]. Therefore, it is necessary to fine-tune the expression level of NahF in E. coli.
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<partinfo>BBa_K1031620 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K1031620 SequenceAndFeatures</partinfo>
  
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We built a library of constitutive promoters for tuning the expression of NahF, and NahR biosensor was used to detect the possible salicylates transformed from salicylaldehydes (Fig. 8).
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<img src="https://static.igem.org/mediawiki/igem.org/0/07/Peking2013_Plugin_fig8.jpg"/>
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[1] Baoli Cai et. al, (2004) Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6, GENE, 336:231–240.
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[2] Zhao H, Li Y, Chen W, Cai B. (2007) A novel salicylaldehyde dehydrogenase-NahV involved in catabolism of naphthalene from Pseudomonas putida ND6. Chin Sci Bull. 52(14):1942—8.
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[3] M. A. Schell, (1983) Cloning and expression in Escherichia coli of the naphthalene degradation genes from plasmid NAH7. J. Bacteriol. 153(2):822-829.
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[4] R. W. Eaton and P. J. Chapman, (1992) Bacterial metabolism of naphthalene_construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions. J. Bacteriol. 174(23):7542-7554.
  
 
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Revision as of 08:17, 24 September 2013

NahF-Terminator

NahF-TT

NahF is a 50.8 KDa protein functioning as salicylaldehyde dehydrogenase to transform salicylaldehyde into salicylic acid (salicylate) using NAD+ (Fig. 7). It is encoded in the naphthalene degradation plasmid from Pseudomonas putida, in which the bacterial oxidation of naphthalene has been extensively investigated. Plasmid pDTG1, NAH7 and pND6-1 identified in different P. putida strains all act to degrade naphthalene and share high identity in amino acid sequences.

Fig. 7 Biochemical reaction catalyzed by enzyme NahF: Salicylaldehyde is transformed into salicylic acid (salicylate) accompanied by the reduction of NAD+ to NADH.


NahF from plasmid NAH7 is mostly widely studied. It has a wide range of substrates, including salicylaldehyde, 5-chloro-salicylaldehyde, 3-nitro-benzaldehyde, 2-methoxy-benzaldehyde etc. and can be activated to 140.3% enzyme activity in the presence of Fe2+ [12]. The wide scope of substrates makes it a commendable candidate to be an Adaptor since many aldehydes can be transformed to the corresponding acids that are detected by NahR biosensor (for salicylates) or biosensor XylS (for benzoates).

NahF has been expressed in E. coli and its ability to catalyze the reaction in vitro and in vivo has been proved [13-14]. However, the reaction efficiency of E. coli was only about 3% of that of P. putida possibly due to the difference of expression regulation in these two bacteria [13]. Therefore, it is necessary to fine-tune the expression level of NahF in E. coli.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 845
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 1083
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 981
    Illegal BsaI.rc site found at 1135


We built a library of constitutive promoters for tuning the expression of NahF, and NahR biosensor was used to detect the possible salicylates transformed from salicylaldehydes (Fig. 8).


[1] Baoli Cai et. al, (2004) Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6, GENE, 336:231–240. [2] Zhao H, Li Y, Chen W, Cai B. (2007) A novel salicylaldehyde dehydrogenase-NahV involved in catabolism of naphthalene from Pseudomonas putida ND6. Chin Sci Bull. 52(14):1942—8. [3] M. A. Schell, (1983) Cloning and expression in Escherichia coli of the naphthalene degradation genes from plasmid NAH7. J. Bacteriol. 153(2):822-829. [4] R. W. Eaton and P. J. Chapman, (1992) Bacterial metabolism of naphthalene_construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions. J. Bacteriol. 174(23):7542-7554.