Difference between revisions of "Part:BBa J119313"
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<partinfo>BBa_J119313 short</partinfo>
 
<partinfo>BBa_J119313 short</partinfo>
  
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The scaffold 2.0 consist of four junctions, which allow to insert parts(promoters.RBS,Genes)between junctions A and Junction B,Junction B and Junction C or the Junction C and Junction D
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This part (also called '''pClone Blue''') will allow users to clone and test new promoters without gel purification or other preparation of DNA - it is ideal for teaching labs. It is a destination vector for Golden Gate Assembly (GGA) using BsaI and ligase. A new promoter can be derived from synthetic oligos, PCR, or a plasmid clone. For proper assembly, the new promoter must have the appropriate 4 nt sticky ends or be flanked by BsaI sites that produce the sticky ends.  With reference to the top strand, the left site must be 5' CGAC 3' and the right site must be 5' GCGG 3'. BsaI always produces a 5' overhang sticky end. Successful GGA assembly replaces the reverse promoter driving GFP expression with the new promoter.  The new promoter will drive expression of AmilCP Blue (see Part BBa_K592009 in the forward direction or GFP expression if it has reverse promoter function. The part incorporate the BD18 bicistronic translational junction (see Part BBa_J119024) engineered by Vivek Mutalik and The BIOFAB Team at biofab.org.
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[[File:J119113.png|500px|]]
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 15:04, 11 September 2013

pClone Blue - Device for Testing New Promoters via Golden Gate Assembly

This part (also called pClone Blue) will allow users to clone and test new promoters without gel purification or other preparation of DNA - it is ideal for teaching labs. It is a destination vector for Golden Gate Assembly (GGA) using BsaI and ligase. A new promoter can be derived from synthetic oligos, PCR, or a plasmid clone. For proper assembly, the new promoter must have the appropriate 4 nt sticky ends or be flanked by BsaI sites that produce the sticky ends. With reference to the top strand, the left site must be 5' CGAC 3' and the right site must be 5' GCGG 3'. BsaI always produces a 5' overhang sticky end. Successful GGA assembly replaces the reverse promoter driving GFP expression with the new promoter. The new promoter will drive expression of AmilCP Blue (see Part BBa_K592009 in the forward direction or GFP expression if it has reverse promoter function. The part incorporate the BD18 bicistronic translational junction (see Part BBa_J119024) engineered by Vivek Mutalik and The BIOFAB Team at biofab.org.

J119113.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1487
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 837
    Illegal BsaI.rc site found at 760