Difference between revisions of "Part:BBa K897318"
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__NOTOC__
 
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<partinfo>BBa_K897318 short</partinfo>
 
<partinfo>BBa_K897318 short</partinfo>
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  As we know, all antisense RNAs had a short half-life of about 1 minute. Because antisense RNA efficiency is determined by the binding
+
  As we know, all antisense RNAs had a short half-life of about 1 minute. Because antisense RNA efficiency is determined by the  
−
rate to the target, which in turn is determined by both antisense RNA concentration and binding rate constant, a higher intracellular
+
binding rate to the target, which in turn is determined by both antisense RNA concentration and binding rate constant, a higher  
−
concentration of the inhibitor will result in higher efficacy.
+
intracellular concentration of the inhibitor will result in higher efficacy.
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   An alternative strategy to stabilize asRNAs is to pair the termini using flanking inverted repeats to create a hairpin structure with
+
   An alternative strategy to stabilize asRNAs is to pair the termini using flanking inverted repeats to create a hairpin structure
−
  the antisense sequence within a large loop. A paired termini (PT) design, where flanking inverted repeats create paired asRNA  
+
  with the antisense sequence within a large loop. A paired termini (PT) design, where flanking inverted repeats create paired asRNA  
 
termini,was proved can produce effective gene silencing. PT asRNAs are abundant and stable and function through an RNase III  
 
termini,was proved can produce effective gene silencing. PT asRNAs are abundant and stable and function through an RNase III  
 
independent mechanism that requires a large stoichiometric excess of asRNA.PT consists of non-endogenous GC-rich sequences and has a  
 
independent mechanism that requires a large stoichiometric excess of asRNA.PT consists of non-endogenous GC-rich sequences and has a  

Revision as of 04:53, 24 September 2012

Paired termini structure 

  As we know, all antisense RNAs had a short half-life of about 1 minute. Because antisense RNA efficiency is determined by the

binding rate to the target, which in turn is determined by both antisense RNA concentration and binding rate constant, a higher intracellular concentration of the inhibitor will result in higher efficacy. 

 An alternative strategy to stabilize asRNAs is to pair the termini using flanking inverted repeats to create a hairpin structure
with the antisense sequence within a large loop. A paired termini (PT) design, where flanking inverted repeats create paired asRNA

termini,was proved can produce effective gene silencing. PT asRNAs are abundant and stable and function through an RNase III independent mechanism that requires a large stoichiometric excess of asRNA.PT consists of non-endogenous GC-rich sequences and has a stem-loop structure, which can improve the stability of as RNA raises its abundance.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 59
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 59
    Illegal NotI site found at 84
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 59
    Illegal BamHI site found at 53
    Illegal XhoI site found at 93
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 59
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 59
  • 1000
    COMPATIBLE WITH RFC[1000]