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             SDS-PAGE Protein gel  <br><HR>
 
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Revision as of 20:35, 22 September 2012

Dispersin generator for B. subtilis

This part associates the Bacillus subtillis Constitutive Promoter (PVeg) with the dispersin B gene (DspB).The DspB gene code for an enzyme which catalyzes the hydrolysis of the extracellular matrix produced by Gram-negative bacteria.

Characterization

Following results show that this part allows B. subtillis 168 strains to scatter the S. aureus and epidermidis cells in a biofilm.


In our plasmid collection, this part is named pBK33 in the backbone Chloramphenicol and pBKH41 in the shuttle vector E. coli – B. subtillis. The corresponding negative control is the shuttle vector (pBKH26 in our collection). We worked with the plasmid pBKH41 for the tests and we tried two different genetic backgrounds: the strain NM522 to make test in E. coli and the strain 168 to make test in Bacillus subtillis.


In you have any question on the following experiments, don’t forget that all the informations relative to our strains, plasmids and protocols are on our wiki notebook.


Confocal Microscopy


Biofilms are formed by the S. aureus fluorescent strain RN4220 pALC2084 expressing GFP. It is a nonmotile laboratory strain, used to form biofilm in 96-well microscopic-grade microtiter plate.

Bacillus subtillis 168 transformed by pBKH41 (DspB in in the shuttle vector) and by pBKH26 (the shuttle vector without gene to have a negative control) were grown on LB medium supplemented with erythromycin (15µg/mL).
After 24h of culture at 30°C without shaking, biofilm were observed under a time-lapse confocal microscope. For each well, two observations are made : one before washing the biofilm and one after washing (i.e. after removing the supernatant).
Cells expressing GFP were excited at 488 nm with an argon laser, and fluorescent emission was collected on a detector in the range of 500-600 nm using an oil-immersion objective with a magnification of 63x. The overall three-dimensional structures of the biofilms were scanned from the solid surface to the interface with the growth medium, using a step of 1 µm.
The 3D constructions are obtained with IMARIS software.


S.aureus biofilm no treated (Blank)



S.aureus biofilm treats by the strain with the shuttle vector without DspB gene (Negativ control)



S.aureus biofilm treats by the strain with the part


Conclusion:
With these observations, we concluded that the part allowed to scatter a S. aureus biofilm after washing. The bindings between the S. aureus cells inside the biofilm are affected, so that the biofilm can be easily eliminate after washing.


Statistic analysis:
In order to quantify our results, we made a statistic analysis with the MATLAB software. Different parameters were used to quantify the biofilm, particularly :
    - Total Biovolume (µm3) : it corresponds to the overall volume of the biofilm and also allows to have an estimation of the biomass in the biofilm.
    - Substratum coverage (%) : it corresponds to the area coverage in the first image of the stack (i.e. at the substratum). It is a good mean to estimate how efficiently the substratum is colonized by bacteria of the population.




    SDS-PAGE Protein gel





    Usage and Biology

    This part was designed to be used in Bacillus strain in order to scatter a Staphyloccocus aureus biofilm.
    Possible applications include biofilm treatment in medical domain, oil or food-processing industries, using this scattering property to eliminate a harmful biofilm.


    Sequence and Features


    Assembly Compatibility:
    • 10
      COMPATIBLE WITH RFC[10]
    • 12
      COMPATIBLE WITH RFC[12]
    • 21
      COMPATIBLE WITH RFC[21]
    • 23
      COMPATIBLE WITH RFC[23]
    • 25
      INCOMPATIBLE WITH RFC[25]
      Illegal NgoMIV site found at 675
    • 1000
      COMPATIBLE WITH RFC[1000]