Difference between revisions of "Part:BBa K801999:Design"
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<br>'''Keywords:''' | <br>'''Keywords:''' | ||
+ | <!--These keywords are necessary to find your part using a fulltext sarch.--> | ||
<!--keyword_1, keyword_2, keyword_3, keyword_4, keyword_5--> | <!--keyword_1, keyword_2, keyword_3, keyword_4, keyword_5--> | ||
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<!--*Part was truncated upstream/downstream compared to template in order to ???--> | <!--*Part was truncated upstream/downstream compared to template in order to ???--> | ||
<!--*The correctness of the part was checked by sequencing./The correctness of the part was checked by test digestion using ?enzyme1? and ?enzyme2?/The correctness of the part was not checked.--> | <!--*The correctness of the part was checked by sequencing./The correctness of the part was checked by test digestion using ?enzyme1? and ?enzyme2?/The correctness of the part was not checked.--> | ||
+ | |||
+ | '''Backbone:'''<br> | ||
+ | <!--*Backbone name: ?backbone_name?--> | ||
+ | <!--*This particular backbone was chosen because ???--> | ||
+ | <!--*Resistance: ???--> | ||
+ | <!--*Copynumber: low/medium/high--> | ||
+ | |||
+ | '''Chassis compability:'''<br> | ||
+ | <!--*Part was designed for ?chassi?--> | ||
+ | <!--*Part should also work in ?other_chassi?.--> | ||
'''Protein coding:'''<br> | '''Protein coding:'''<br> | ||
− | <!--* | + | <!--*Protein: ?Name_of_gene_product? [Nucleotide 1 to ???]--> |
− | <!--*The protein has the amino acid replacements ???99??? to ???.--> | + | <!--*The protein has the amino acid replacements ???99??? to ???99???.--> |
<!--*The protein encoded is posttranslationally modified by ???.--> | <!--*The protein encoded is posttranslationally modified by ???.--> | ||
+ | <!--*Tag: n-terminally fused/c-terminally fused His5/His6/Strep/Flag/???--> | ||
'''Enzymatic activity:''' | '''Enzymatic activity:''' | ||
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'''Cytotoxicity:''' | '''Cytotoxicity:''' | ||
<!--none/not known/cytotoxic for ''organism name''--> | <!--none/not known/cytotoxic for ''organism name''--> | ||
+ | |||
+ | '''Intellectual Property information:''' | ||
+ | <!--The part contains seqeunces that are protected by the patent ???--> | ||
===Source=== | ===Source=== | ||
+ | |||
'''Source:'''<br> | '''Source:'''<br> | ||
<!--*Amplified from commercial system: plasmid name, system name, company name<br>--> | <!--*Amplified from commercial system: plasmid name, system name, company name<br>--> | ||
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<!--*Genesequence derived from ''?organism_name?''--> | <!--*Genesequence derived from ''?organism_name?''--> | ||
<!--*Codonoptimized for ''?organism_name?''--> | <!--*Codonoptimized for ''?organism_name?''--> | ||
+ | |||
+ | |||
===References=== | ===References=== |
Revision as of 15:59, 16 September 2012
Test page for standardized BioBrick part descriptions
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Keywords:
Abbreviations:
Design Notes
Other versions of this BioBrick:
Cloning details:
Backbone:
Chassis compability:
Protein coding:
Enzymatic activity:
Cytotoxicity:
Intellectual Property information:
Source
Source:
Organism:
References
Literature references:
Sequence references:
Structure reference:
Test page for standardized BioBrick part descriptions
Keywords:
fluorescent, reporter, chromophore, luminescence, bioluminescence, photoprotein
Used abbreviations:
- GFP = Green Fluorescent Protein
Design Notes
Other versions of this BioBrick:
- The BioBrick BBa_I757008 encodes a yellow fluorescent protein (mVenus) derived from GFP
- The BioBrick BBa_I757008 encodes GFP in RFC25 for protein fusions
Cloning details:
- Part was designed in RFC10
- Mutation G381A to delete XbaI restriction site
- The correctness of the part was checked by sequencing
Protein coding:
- Green Fluorescent Protein [Nucleotide 1 to 714]
- The protein has the amino acid replacements Ser65Thr in order to increase fluorescence, photostability and to shift the major excitation peak to 488 nm. (see Heim et al., 1995)
- The protein encoded is posttranslationally modified by a cross-link between Ser65 and Gly67 to form the chromophore.
Enzymatic activity: none
Cytotoxicity: none
Source
Source:
- Amplified from plasmid: pSB1C3-GFP-generator, provided by Osamu Shimomura, Boston University School of Medicine, USA
Forward Primer:
5'- ATGATGATGATG - 3'
Reverse Primer:
5'- ATGATGATGATG - 3'
Organism:
- Sequence derived from Aequorea victoria
- Codon optimized for Escherichia coli
References
Literature references:
- [http://www.ncbi.nlm.nih.gov/pubmed/20010584 Pubmed: Prasher, 1995: Using GFP to see the light.(Review)]
- [http://www.ncbi.nlm.nih.gov/pubmed/7854443 Pubmed: Heim, 1995: Improved green fluorescence.(Reference for Chromophore)]
Sequence references:
- [http://www.ncbi.nlm.nih.gov/nuccore/X83959.1 GenBank: A.victoria mRNA for green fluorescent protein (ID:gfp1)]
- [http://www.ebi.ac.uk/interpro/IEntry?ac=IPR011584 Interpro: Green fluorescent protein-related ]
- [http://www.uniprot.org/uniprot/P42212 Uniprot: Green fluorescent protein]
- [http://pfam.sanger.ac.uk/family/PF01353 Pfam: Green fluorescent protein]
Structure reference:
- [http://www.rcsb.org/pdb/explore/explore.do?structureId=1EMA PDB: Green Fluorescent Protein from Aequorea victoria]