Difference between revisions of "Part:BBa K562007:Experience"

Revision as of 11:48, 1 October 2011

This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Applications of BBa_K562007

User Reviews

UNIQa1eaa9e3e1a896cf-partinfo-00000000-QINU

•••

iGEM Dundee 2011

This part was seen work in practice. Synthesis of the seven encoded polypeptides in very small scale cultures (1 ml) was observed by 35-S-Methionine labelling (Figure 1).

Results

E. coli was transformed with BBa_K562009 expressed from pT7.5, and the plasmid pGP1-2 encoding T7 polymerase, and grown aerobically for 3 hours in LB medium. T7 polymerase synthesis was induced by heat shock before all native transcription in E. coli was halted by the addition of rifampicin. 10 minutes later 1 ml of cells was then collected and spiked with 35-S-labelled Methionine. Following a 10 minute incubation the cell pellet was harvested and resuspended in Laemmli disaggregation buffer.

This very small scale and sensitive technique reveals all polypeptides being expressed from the plasmid.

Figure 1: Transcription and translation of gene products produced from BBa_K562009. Radiolabelled revealed bands of the corresponding sizes to the PduA, PduJ, PduK, PduN, PduT and PduU proteins. PduB can be expressed as a smaller PduB' variant from an alternative translation start site. The RED ARROW points to the lane producing polypeptides from BBa_K562009.

E. coli was transformed with BBa_K562009 and BBa_K562013 and grown anaerobically for 16 hours in LB medium containing 0.4% (w/v) glucose. Cells were harvested, washed and broken in 50 mls B-PER solution before being loaded onto an IMAC column. Bound proteins were eluted with an imidazole gradient and analysed by SDS-PAGE.

Fractions contained all the components of the synthetic microcompartment. The bands shown were positively identified by tryptic peptide mass fingerprinting. In addition, the co-expressed GFP was also identified around 26 kDa. Note that the banding pattern changed depending on whether the sample was boiled. In unboiled samples the PduB protein (which is produced as full-lenth PduB and truncated PduB') remains in an oligomeric state and appears larger than expected on the gel.

Figure 2: Isolation of a synthetic bacterial microcompartment by metal affinity chromatography. Each of PduB, PduU, PduN, and PduK carry hexa-histidine tags. PduA, PduT, and PduJ are not tagged.

UNIQa1eaa9e3e1a896cf-partinfo-00000006-QINU

@@ Line 16: / Line 16: @@
 |width='60%' valign='top'|
-This part was seen work in practice. Synthesis of the seven encoded polypeptides in very small scale cultures (1 ml) was observed by 35-S-Methionine labelling (Figure 1) and the proteins could also be purified from large scale cultures (5 litre) and visualised by Coomassie-style staining of SDS-PAGE gels (Figure 2).
+This part was seen work in practice. Synthesis of the seven encoded polypeptides in very small scale cultures (1 ml) was observed by 35-S-Methionine labelling (Figure 1).
 |}
 ;
 <!-- End of the user review template -->
-<!-- End of the user review template -->
+===Results===
+<i>E. coli</i> was transformed with <partinfo>BBa_K562009</partinfo> expressed from pT7.5, and the plasmid pGP1-2 encoding T7 polymerase, and grown aerobically for 3 hours in LB medium. T7 polymerase synthesis was induced by heat shock before all native transcription in <i>E. coli</i> was halted by the addition of rifampicin. 10 minutes later 1 ml of cells was then collected and spiked with 35-S-labelled Methionine. Following a 10 minute incubation the cell pellet was harvested and resuspended in Laemmli disaggregation buffer.
+This very small scale and sensitive technique reveals all polypeptides being expressed from the plasmid.
+[[Image:2009.jpg]]
+:Figure 1: Transcription and translation of gene products produced from <partinfo>BBa_K562009</partinfo>. Radiolabelled revealed bands of the corresponding sizes to the PduA, PduJ, PduK, PduN, PduT and PduU proteins. PduB can be expressed as a smaller PduB' variant from an alternative translation start site. The RED ARROW points to the lane producing polypeptides from BBa_K562009.
+<i>E. coli</i> was transformed with <partinfo>BBa_K562009</partinfo> and <partinfo>BBa_K562013</partinfo> and grown anaerobically for 16 hours in LB medium containing 0.4% (w/v) glucose. Cells were harvested, washed and broken in 50 mls B-PER solution before being loaded onto an IMAC column. Bound proteins were eluted with an imidazole gradient and analysed by SDS-PAGE.
+Fractions contained all the components of the synthetic microcompartment. The bands shown were positively identified by tryptic peptide mass fingerprinting. In addition, the co-expressed GFP was also identified around 26 kDa. Note that the banding pattern changed depending on whether the sample was boiled. In unboiled samples the PduB protein (which is produced as full-lenth PduB and truncated PduB') remains in an oligomeric state and appears larger than expected on the gel.
+[[Image:BBa_K562009_Prot_Data.jpg]]
+:Figure 2: Isolation of a synthetic bacterial microcompartment by metal affinity chromatography. Each of PduB, PduU, PduN, and PduK carry hexa-histidine tags. PduA, PduT, and PduJ are not tagged.
 <!-- DON'T DELETE --><partinfo>BBa_K562007 EndReviews</partinfo>