Difference between revisions of "Part:BBa K515102:Experience"

Line 5: Line 5:
 
<p> Two tests were performed to observe chemotactic response over a large range of chemoattractant concentration and to observe differences in much finer milimolar ranges of attractant concentration.</p>
 
<p> Two tests were performed to observe chemotactic response over a large range of chemoattractant concentration and to observe differences in much finer milimolar ranges of attractant concentration.</p>
 
<p> Table 1: Ranges of attractant concentration tested.</p>
 
<p> Table 1: Ranges of attractant concentration tested.</p>
 +
<style>
 +
/* Style Definitions */
 +
table.MsoNormalTable
 +
{mso-style-name:"Table Normal";
 +
mso-tstyle-rowband-size:0;
 +
mso-tstyle-colband-size:0;
 +
mso-style-noshow:yes;
 +
mso-style-priority:99;
 +
mso-style-qformat:yes;
 +
mso-style-parent:"";
 +
mso-padding-alt:0cm 5.4pt 0cm 5.4pt;
 +
mso-para-margin-top:0cm;
 +
mso-para-margin-right:0cm;
 +
mso-para-margin-bottom:10.0pt;
 +
mso-para-margin-left:0cm;
 +
line-height:115%;
 +
mso-pagination:widow-orphan;
 +
font-size:11.0pt;
 +
font-family:"Calibri","sans-serif";
 +
mso-ascii-font-family:Calibri;
 +
mso-ascii-theme-font:minor-latin;
 +
mso-fareast-font-family:"Times New Roman";
 +
mso-fareast-theme-font:minor-fareast;
 +
mso-hansi-font-family:Calibri;
 +
mso-hansi-theme-font:minor-latin;}
 +
table.MsoTableGrid
 +
{mso-style-name:"Table Grid";
 +
mso-tstyle-rowband-size:0;
 +
mso-tstyle-colband-size:0;
 +
mso-style-priority:59;
 +
mso-style-unhide:no;
 +
border:solid windowtext 1.0pt;
 +
mso-border-alt:solid windowtext .5pt;
 +
mso-padding-alt:0cm 5.4pt 0cm 5.4pt;
 +
mso-border-insideh:.5pt solid windowtext;
 +
mso-border-insidev:.5pt solid windowtext;
 +
mso-para-margin:0cm;
 +
mso-para-margin-bottom:.0001pt;
 +
mso-pagination:widow-orphan;
 +
font-size:11.0pt;
 +
font-family:"Calibri","sans-serif";
 +
mso-ascii-font-family:Calibri;
 +
mso-ascii-theme-font:minor-latin;
 +
mso-hansi-font-family:Calibri;
 +
mso-hansi-theme-font:minor-latin;
 +
mso-fareast-language:EN-US;}
 +
</style>
 +
<![endif]-->
  
 +
</p>
 +
<table class="MsoTableGrid" style="width:464.4pt;margin-left:-1.9pt;border-collapse:collapse;border:none;
 +
mso-border-alt:solid windowtext .5pt;mso-padding-alt:0cm 3.5pt 0cm 3.5pt" border="1" cellpadding="0" cellspacing="0" width="619">
 
   
 
   
 +
<tbody>
 +
<tr style="mso-yfti-irow:0;mso-yfti-firstrow:yes;height:17.65pt">
 +
 
 +
<td colspan="7" style="width:464.4pt;border:solid windowtext 1.0pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 3.5pt 0cm 3.5pt;height:17.65pt" valign="top" width="619">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;
 +
  text-align:center;line-height:normal" align="center"><span style="mso-ansi-language:SK">Attractant
 +
  concentration</span></p>
 +
  </td>
 +
</tr>
 +
 +
<tr style="mso-yfti-irow:1">
 +
 
 +
<td style="width:66.3pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">Test 1</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">0 M</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10<sup>-5</sup> M</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10<sup>-4</sup> M</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10<sup>-3</sup> M</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10<sup>-2</sup> M</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10<sup>-1</sup> M</span></p>
 +
  </td>
 +
</tr>
 +
 +
<tr style="mso-yfti-irow:2;mso-yfti-lastrow:yes">
 +
 
 +
<td style="width:66.3pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">Test 2</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">0 mM</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">5 mM</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">10 mM</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">15 mM</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">20 mM</span></p>
 +
  </td>
 +
 
 +
<td style="width:66.35pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt" valign="top" width="88">
 +
 
 +
<p class="MsoNormal" style="margin-bottom:0cm;margin-bottom:.0001pt;line-height:
 +
  normal"><span style="mso-ansi-language:SK">25 mM</span></p>
 +
  </td>
 +
</tr>
 +
</tbody>
 +
</table>
 +
  
 
===User Reviews===
 
===User Reviews===

Revision as of 17:11, 10 September 2011

Characterisation

This part (BBa K515102) has been characterised qualitatively and quantitatively for chemotactic response towards L (-) malic acid. The tests were performed across a range of different attractant concentrations to observe optimal functioning of the part. Qualitative tests were performed using semi solid agar assays, quantitative analysis was performed using high - throughput capillary assay with cell count for each capillary evaluated using FACS. Behavioral analysis of E. coli expressing this part was done using Wide - field microscopy, and manual tracking was used to evaluate tactic response. Negative control used was E. coli 5α strain with a selectable marker for ampicillin and kanamycin. As positive control chemotactic response of E. coli 5α strain to attractant L (-) serine was tested, as serine is compatible with endogenous chemotaxis system of E. coli 5α strain.

Qualitative assay

Two tests were performed to observe chemotactic response over a large range of chemoattractant concentration and to observe differences in much finer milimolar ranges of attractant concentration.

Table 1: Ranges of attractant concentration tested.

<style>

/* Style Definitions */
table.MsoNormalTable

{mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin-top:0cm; mso-para-margin-right:0cm; mso-para-margin-bottom:10.0pt; mso-para-margin-left:0cm; line-height:115%; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin;} table.MsoTableGrid {mso-style-name:"Table Grid"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-priority:59; mso-style-unhide:no; border:solid windowtext 1.0pt; mso-border-alt:solid windowtext .5pt; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-border-insideh:.5pt solid windowtext; mso-border-insidev:.5pt solid windowtext; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-fareast-language:EN-US;} </style> <![endif]-->

</p>

<tbody> </tbody>

Attractant concentration

Test 1

0 M

10-5 M

10-4 M

10-3 M

10-2 M

10-1 M

Test 2

0 mM

5 mM

10 mM

15 mM

20 mM

25 mM


User Reviews

UNIQ556c9e454af667ff-partinfo-00000000-QINU UNIQ556c9e454af667ff-partinfo-00000001-QINU