Difference between revisions of "Part:BBa K523010"

Revision as of 09:36, 11 August 2011

β-glucosidase for BioSandwich

This is a modified version of BBa_K392008 for use with the BioSandwich protocol of Edinburgh 2011. However, since the published sequence for K392008 has significant deviations from reality, the expected sequence for this new part does not match it precisely.

BioSandwich assembly uses an in-frame BglII site (formed by the last 2 bases of the RFC10 prefix and the first 4 bases at the start of this BioBrick) and an in-frame SpeI site (present in the RFC10 suffix). Because the SpeI site is out of frame, two extra "G" bases have been added at the end. When combined with the T at the start of the RFC10 suffix, they code for a glycine residue and correct the frameshift.

We discovered late on that the first 220 or so bases are not coding; the part needs to be remade.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal XhoI site found at 863
Illegal XhoI site found at 1097
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal NgoMIV site found at 350
Illegal AgeI site found at 246
Illegal AgeI site found at 441
1000
INCOMPATIBLE WITH RFC[1000]
Illegal SapI.rc site found at 223

@@ Line 2: / Line 2: @@
 <partinfo>BBa_K523010 short</partinfo>
-This is a modified version of <partinfo>BBa_K392008</partinfo> for use with the BioSandwich protocol of Edinburgh 2011.
+This is a modified version of <partinfo>BBa_K392008</partinfo> for use with the BioSandwich protocol of Edinburgh 2011. However, since the published sequence for K392008 has significant deviations from reality, the expected sequence for this new part does not match it precisely.
 BioSandwich assembly uses an in-frame BglII site (formed by the last 2 bases of the RFC10 prefix and the first 4 bases at the start of this BioBrick) and an in-frame SpeI site (present in the RFC10 suffix). Because the SpeI site is out of frame, two extra "G" bases have been added at the end. When combined with the T at the start of the RFC10 suffix, they code for a glycine residue and correct the frameshift.