Difference between revisions of "Help:Contents"
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{|
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[[Registry_FAQ|'''Frequently Asked Questions''']]    |
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#splash-title {margin-bottom: 5px; border: 0px solid #000; font-size: 20pt; font-weight: bold; color: #006633;}
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[[Help: About the Registry|About the Registry]]      |
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[[Registry:Bug reports|Bug Reports]]  |
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[[Registry:Feature requests|Feature Requests]]  |
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|}
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<hr>
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{|cellspacing="0" cellpadding="0"|
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|valign='top'|
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==An Introduction to BioBrick&trade; Standard Biological Parts==
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{|width=375px
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#main-menu img {opacity: 1;}
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|valign='top'|[https://parts.igem.org/wiki/index.php?title=Help:An_Introduction_to_BioBricks https://static.igem.org/mediawiki/parts/5/58/Brick.png]
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BioBricks is a standard for interchangable parts, developed with a view to building biological systems in living cells. Here you'll find a brief introduction to BioBricks as well as the plasmids that contain them:
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*[[Help:Team experience tutorial|A Team Experience Tutorial]]
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*[[Help:An Introduction to BioBricks|An introduction to BioBrick&reg; parts]]
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*[[Help:BioBrick Part Names|BioBrick Part Names]]
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*[[Help:Part tables|Part Tables]]
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*[[Help:Plasmids|An introduction to Plasmids]]
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*[[Help:Ribosome Binding Sites|An introduction to Ribosome Binding Sites]]
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*[[Help:Terminators|An introduction to Terminators]]
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*[[Help:Part_Features|How to Edit and Interpret Part Features]]
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/ Introduction to the Abstraction Hierarchy]
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|}
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==Assembling Biological Parts==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Assembly  https://static.igem.org/mediawiki/parts/f/ff/Bricks.png]
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|valign='top' |
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BioBricks have been designed to be assembled using normal cloning techniques. Find out more about the diffrent types of [[Help:BioBrick Assembly|Assembly]]:
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*[[Assembly:3A Assembly|3A Assembly]]
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*[[Assembly:Standard assembly|Standard Assembly]]
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*[[Assembly:Rolling assembly |Parallel Assembly]]
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*[[Assembly:Robotic assembly|Automated Assembly]]
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*[[Assembly:RBS-CDS issues|RBS-CDS Issues]]
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*[[Help:BioBrick Prefix and Suffix|BioBrick Prefix and Suffix]]
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*[https://parts.igem.org/partsdb/scars.cgi Registry Assembly Standards]
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|}
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|-
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==BioBrick&trade; Tools & The Registry==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Tools https://static.igem.org/mediawiki/parts/9/93/Toolman.png]
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|width=300px valign='top'|
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An overview of the Registry's computational tools and how one may go about using them as they look to design and develop parts, device and systems.
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*[[Help:Toolbox Overview | Toolbox Overview]]
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*[[Help:Sandbox Overview | Sandbox Overview]] 
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*[[Tutorial:Adding a Basic Part|Tutorial: How to add a basic BioBrick]]
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*[[Help:Standardization|Making BioBrick DNA]]
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*[[Registry_API|Registry API for Software Developers]]
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</style>
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<body>
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<table id="splash-body">
  
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==At the Bench==
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<tr><td colspan="3"><div id="splash-title">The Registry Help Page</div></td></tr>
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:At_the_Bench https://static.igem.org/mediawiki/parts/f/f7/Bench.png]
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Overview & links on how to physically assembly BioBricks
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*[http://openwetware.org/wiki/BioBricks_construction_tutorial How to perform a construction] - A step by step tutorial detailing one method of making [[Help:BioBrick Assembly|Biobrick assemblies]]
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<tr><td colspan="3">
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*[[Help:Protocols | iGEM HQ Protocols]]
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<div id="splash-desc">
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*[http://openwetware.org/wiki/Protocols Open Wetware Protocols]
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New to iGEM and the Registry? You'll want to head over to the <a href="https://parts.igem.org/Help:Learn">Learn</a> section first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (<strong>hq (at) igem . org</strong>) or on <a href="https://parts.igem.org/forum/Forum_List?n=Registry">the forum</a>. You can also look through the old help pages if you couldn't find what you're looking for.
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</div>
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</td></tr>
  
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<tr><td colspan="3">
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|-
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<table id="main-menu">
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|valign='top'|
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<tr>
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<td align="left" valign="top"><a href="https://parts.igem.org/Help:Learn">
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<img src="https://static.igem.org/mediawiki/parts/9/9d/Help-Page-Learn.png" width="101" height="101" alt=""></a></td>
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<td rowspan="2">
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<img src="https://static.igem.org/mediawiki/parts/5/55/Help-Page-Spacer.png" width="43" height="101" alt=""></td>
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<td align="left" valign="top"><a href="https://parts.igem.org/Help:Get">
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<img src="https://static.igem.org/mediawiki/parts/7/71/Help-Page-Get.png" width="101" height="101" alt=""></a></td>
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<td rowspan="2">
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<img src="https://static.igem.org/mediawiki/parts/5/55/Help-Page-Spacer.png" width="43" height="101" alt=""></td>
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<td align="left" valign="top"><a href="https://parts.igem.org/Help:Make">
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<img src="https://static.igem.org/mediawiki/parts/3/3b/Help-Page-Make.png" width="101" height="101" alt=""></a></td>
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<td rowspan="2">
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<img src="https://static.igem.org/mediawiki/parts/5/55/Help-Page-Spacer.png" width="43" height="101" alt=""></td>
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<td align="left" valign="top"><a href="https://parts.igem.org/Help:Use">
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<img src="https://static.igem.org/mediawiki/parts/1/11/Help-Page-Use.png" width="101" height="101" alt=""></a></td>
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<td rowspan="2">
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<img src="https://static.igem.org/mediawiki/parts/5/55/Help-Page-Spacer.png" width="43" height="101" alt=""></td>
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<td align="left" valign="top"><a href="https://parts.igem.org/Help:Give">
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<img src="https://static.igem.org/mediawiki/parts/5/57/Help-Page-Give.png" width="101" height="101" alt=""></a></td>
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</tr>
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</table>
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</td></tr>
  
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==DNA Part Repositories==
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<tr>
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{|valign'top'|
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<td>
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|[https://parts.igem.org/wiki/index.php?title=Help:Physical_DNA https://parts.igem.org/images/iGEM_buttons/Buttondna.gif]
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<div class="catblock" id="tier1">
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|valign'top'|
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<div class="title1"><a href="https://parts.igem.org/Help:Learn">learn!</a></div>
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*'''<span style="color:red; font-weight:bold; font-size:115%;">NEW:</span>''' [[Help:Spring_2011_DNA_distribution|Information about the Spring 2011 DNA Distribution]]
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<ul>
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*[[Help:Requesting_Parts|Requesting Parts]]
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<li><a href="https://parts.igem.org/Help:Synthetic_Biology">synthetic biology</a></li>
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*[[Help:Using_the_online_QC_resources|Using the online QC resources]]
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<li><a href="https://parts.igem.org/Help:Philosophy">our philosophy</a></li>
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**[[Help:Sequence_Analysis_Tools|Using the Sequence Analysis Tools]]
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<li><a href="https://parts.igem.org/Help:Repository">the repository</a></li>
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*[[Help:Protocols/Linearized_Plasmid_Backbones|Linearized Plasmid Backbones]]
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<li><a href="https://parts.igem.org/Help:Parts">parts</a></li>
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*[[Help:Transformation_Protocol|Transforming Competent Cells]]
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<li><a href="https://parts.igem.org/Help:Plasmid_Backbones">plasmid backbones</a></li>
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*[[Help:Sequencing Tool:Automatic Assessment Algorithm|Automatic Sequencing Algorithm]]
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<li><a href="https://parts.igem.org/Help:Standards">standards</a></li>
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*[[Help:Shipping Stabs|Shipping times for stabs]]
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<li><a href="https://parts.igem.org/Help:Assembly">assembly</a></li>
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*[[Help:2011_Distribution_Creation_Handbook|2011 Distribution Creation Handbook]]
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</ul>
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*[[Help:Repositories:More | More...]]
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</div>
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|}
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</td>
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|width=40px|
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|valign='top'|
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==Users & Groups==
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<td>
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{|
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<div class="catblock" id="tier1">
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|valign='top'|
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<div class="title1"><a href="https://parts.igem.org/Help:Get">get!</a></div>
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[https://parts.igem.org/wiki/index.php?title=Help:Users_and_Groups https://static.igem.org/mediawiki/parts/3/31/Users_and_groups_72px_icon.png]
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<ul>
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<li><a href="https://parts.igem.org/Help:Register">register</a></li>
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Registry Users & groups overview
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<li><a href="https://parts.igem.org/Help:Locating_Parts">locating parts</a></li>
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*[[Help: Registry Accounts|How to make Registry Accounts]]
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<li><a href="https://parts.igem.org/Help:Quality_Control">quality control</a></li>
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*[http://2006.igem.org/Help:Wiki How to edit a Wiki]
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<li><a href="https://parts.igem.org/Help:Distribution_Kits">distribution kit</a></li>
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*[[Help: Partinfo Tag|Including Part Information on your wiki page]]
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<li><a href="https://parts.igem.org/Help:Requesting Parts">requesting parts</a></li>
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*[[Help: Editing Experience|Editing Part experience]]
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</ul>
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*[[Help: Single Login System|Single login system for iGEM and the Registry]]
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</div>
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</td>
  
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<td>
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<div class="catblock" id="tier1">
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<div class="title1"><a href="https://parts.igem.org/Help:Make">make!</a></div>
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<ul>
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<li><a href="https://parts.igem.org/Help:Adding_Parts">adding parts</a></li>
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<li><a href="https://parts.igem.org/Help:Constructing_Parts">constructing parts</a></li>
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</ul>
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</div>
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</td>
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</tr>
  
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<tr>
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|}
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<td>
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----
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<div class="catblock" id="tier1">
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<div class="title1"><a href="https://parts.igem.org/Help:Use">use!</a></div>
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<ul>
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<li><a href="https://parts.igem.org/Help:Using_Parts">using parts</a></li>
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</ul>
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</div>
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</td>
  
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==Help: Glossary==  
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<td>
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[[Image:glossary.jpg]]
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<div class="catblock" id="tier1">
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[[Help:Glossary| A compedium and index of terms found in the Registry and synthetic biology indexed alphabetically]]
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<div class="title1"><a href="https://parts.igem.org/Help:Give">give!</a></div>
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<ul>
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<li><a href="https://parts.igem.org/Help:Sending_Parts">sending parts</a></li>
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</ul>
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</div>
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</td>
  
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<td>
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<div class="catblock" id="tier1">
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<div class="title1"><a href="https://parts.igem.org/Help:Share">share!</a></div>
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<ul>
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<li><a href="https://parts.igem.org/Help:Sharing_Experience">share your experience</a></li>
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</ul>
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</div>
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</td>
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</tr>
  
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<tr>
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<td>
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<div class="catblock" id="tier2">
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<div class="title1"><a href="https://parts.igem.org/Help:Nav&Tools">navigation & tools</div>
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<ul>
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<li><a href="https://parts.igem.org/Help:Nav/Part_Main_Page">part main page</a></li>
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<li><a href="https://parts.igem.org/Help:Nav/Experience_Page">experience page</a></li>
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<li><a href="https://parts.igem.org/Help:Nav/Get_This_Part">get this part page</a></li>
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<li><a href="https://parts.igem.org/Help:Nav/Part_Tools">part tools</a></li>
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<li>more...</li>
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</ul>
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</div>
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</td>
  
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==Help: Under Construction==  
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<td>
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<div class="catblock" id="tier2">
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<div class="title1"><a href="https://parts.igem.org/Help:Protocol">protocols</a></div>
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<ul>
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<li>how to transform parts</li>
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<li>how to "biobrick" a part</li>
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<li>how to assemble parts</li>
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<li>more...</li>
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</ul>
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</div>
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</td>
  
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These documentation seeds are not yet complete...
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<td>
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{|
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<div class="catblock" id="tier2">
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<div class="title1"><a href="https://parts.igem.org/Help:Resources">resources</a></div>
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*[[Help: Registry 2.0|Registry 2.0 Ideas]] - Ideas and discussion of how the Registry should change at the end of 2006.
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<ul>
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*[[Help: Part Categories|Part Categories]]
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<li><a href="https://parts.igem.org/Help:FAQ">faq</a></li>
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*[[Help: Part Versions|Part Versions]]
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<li><a href="https://parts.igem.org/Help:Glossary">glossary</a></li>
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*[[Help:Starting Wet-lab]]
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<li><a href="https://parts.igem.org/Help:Site_Map">site map</a></li>
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*[[Registry graphics gallery]]
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<li><a href="https://parts.igem.org/Help:Contact">contact</a></li>
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*[[Help: Wiki Tag groupparts|Wiki tag grouparts]]
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</ul>
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*[[Help: Twins|Twins]]
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</div>
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*[https://parts.igem.org/cgi/htdocs/registry.cgi Old About the Registry]
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</td>
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/index.cgi Parts, Devices & Systems]
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</tr>
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*[[Help:BioBrick Design|BioBrick Design]]
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*[[Tutorial:Adding a BioBrick Composite Part|Composite Part Tutorial]]
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</table>
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</html>

Revision as of 14:07, 20 April 2012

The Registry Help Page
New to iGEM and the Registry? You'll want to head over to the Learn section first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (hq (at) igem . org) or on the forum. You can also look through the old help pages if you couldn't find what you're looking for.
protocols
  • how to transform parts
  • how to "biobrick" a part
  • how to assemble parts
  • more...