Difference between revisions of "Part:BBa K349114"
 
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<partinfo>BBa_K349114 short</partinfo>
 
<partinfo>BBa_K349114 short</partinfo>
  
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Red Fluorescent Protein.  Please note this part is naked meaning it does not include a promoter or RBS or start or stop codon. The promoter and terminator are intended to be reconstituted through the adjoining linkers attached through the BioBytes Assembly Method 2.0.
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Red Fluorescent Protein.  Please note this part is "naked", meaning it does not include a promoter, RBS, start and stop codons. The promoter and terminator are intended to be reconstituted through the adjoining AB BioBytes via the BioBytes 2.0 assembly method.
  
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<!-- Add more about the biology of this part here
 
 
===Usage and Biology===
 
===Usage and Biology===
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This part is compatible with the Team Alberta 2010 Biobytes 2.0 assembly method. It can be utilized as an AB BioByte following digestion with BsaI and purification. The following protocol outlines the Biobytes 2.0 assembly method: <br>
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1) Mix the iron micro beads for 10 minutes.<br>
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2) Transfer 20 ul of iron micro beads to a 1.5 mL tube. <br>
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3) Pull the beads to the side using a magnetic tube rack. <br>
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4) Remove and discard the supernatant. <br>
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5) Add 50 ul of BioBytes 2.0 Wash Buffer to the beads. Flick gently to resuspend. <br>
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6) Pull the beads to the side using a magnetic tube rack. <br>
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7) Remove and discard the supernatant. <br>
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8) Repeat steps 5 to 7. <br>
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9) Add 200 ng of a premade anchor-Byte construct (premade in the GENOMIKON kit)  to the beads and top off the volume to 20ul with TE Buffer. Flick gently to resuspend. <br>
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10) Allow annealing for 30 minutes, mixing by flicking every 5 minutes. Ensure that there are no droplets on the sides of the tube. <br>
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11) Repeat steps 6 and 7. <br>
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12) Repeat steps 5 to 7. <br>
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13) Add 200 ng of the next BioByte of your construct, making sure that a BA Byte follows an AB Byte and vice versa. Add an appropriate amount of 2x QuickLigase Buffer, Quick Ligase and TE to a total volume of 20ul. <br>
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14) Flick gently to resuspend.  Allow ligation for five minutes, flicking gently every minute. <br>
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15) Add 30ul of Wash Buffer to the tube. Flick gently. <br>
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16) Repeats steps 6 and 7. <br>
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17) Repeat steps 5 to 7 twice. <br>
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18) Repeat steps 13 to 17 for each subsequent Byte addition, including the last BioByte. <br>
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19) After the last Byte has been ligated and washed, add 30 ul of 75C Elution Buffer. Keep at 75C for 10 minutes. <br>
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20) After 10  minutes, still at 75C, put the tube into a magnetic rack . Allow the beads to be pulled aside and collect the supernatant into a clean 1.5 mL tube. The supernatant will contain your construct. <br>
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For more information on this construction method click <html><a href="http://2010.igem.org/Team:Alberta/biobyte2">here</a></html>
  
 
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Latest revision as of 02:16, 28 October 2010

nRFP-AB (BioBytes 2.0)

Red Fluorescent Protein. Please note this part is "naked", meaning it does not include a promoter, RBS, start and stop codons. The promoter and terminator are intended to be reconstituted through the adjoining AB BioBytes via the BioBytes 2.0 assembly method.

Usage and Biology

This part is compatible with the Team Alberta 2010 Biobytes 2.0 assembly method. It can be utilized as an AB BioByte following digestion with BsaI and purification. The following protocol outlines the Biobytes 2.0 assembly method:
1) Mix the iron micro beads for 10 minutes.
2) Transfer 20 ul of iron micro beads to a 1.5 mL tube.
3) Pull the beads to the side using a magnetic tube rack.
4) Remove and discard the supernatant.
5) Add 50 ul of BioBytes 2.0 Wash Buffer to the beads. Flick gently to resuspend.
6) Pull the beads to the side using a magnetic tube rack.
7) Remove and discard the supernatant.
8) Repeat steps 5 to 7.
9) Add 200 ng of a premade anchor-Byte construct (premade in the GENOMIKON kit) to the beads and top off the volume to 20ul with TE Buffer. Flick gently to resuspend.
10) Allow annealing for 30 minutes, mixing by flicking every 5 minutes. Ensure that there are no droplets on the sides of the tube.
11) Repeat steps 6 and 7.
12) Repeat steps 5 to 7.
13) Add 200 ng of the next BioByte of your construct, making sure that a BA Byte follows an AB Byte and vice versa. Add an appropriate amount of 2x QuickLigase Buffer, Quick Ligase and TE to a total volume of 20ul.
14) Flick gently to resuspend. Allow ligation for five minutes, flicking gently every minute.
15) Add 30ul of Wash Buffer to the tube. Flick gently.
16) Repeats steps 6 and 7.
17) Repeat steps 5 to 7 twice.
18) Repeat steps 13 to 17 for each subsequent Byte addition, including the last BioByte.
19) After the last Byte has been ligated and washed, add 30 ul of 75C Elution Buffer. Keep at 75C for 10 minutes.
20) After 10 minutes, still at 75C, put the tube into a magnetic rack . Allow the beads to be pulled aside and collect the supernatant into a clean 1.5 mL tube. The supernatant will contain your construct.

For more information on this construction method click here

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 564
    Illegal AgeI site found at 676
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1
    Illegal BsaI.rc site found at 687