Difference between revisions of "Part:BBa K382002"

 
 
(13 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
 
 
__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K382002 short</partinfo>
 
<partinfo>BBa_K382002 short</partinfo>
  
−
Vector for transformation of plants. Cloning in E. Coli, transfer to agrobacteria, integrates in the plant genome. Kan resistance in bacteria, confers Basta resistance in plants. Contains the pENTCUP promoter upstream of MCS for constitutive expression of gene of interest.
+
Vector for transformation of plants. Cloning in ''E. Coli'', transfer to agrobacteria, integrates in the plant genome. Kanamycin resistance in bacteria, confers Basta resistance in plants. Contains the pENTCUP2 promoter upstream of MCS for constitutive expression of gene of interest.<br>
 +
 
 +
 
 +
'''Confirmed functions''':
 +
* Kan resistance in bacteria: confirmed by transformation and colony growth of ''E. coli'' (DH5alpha) and ''Agrobacterium tumefaciens''
 +
* Basta resistance in plants: confirmed by selective germination of transformed ''Arabidopsis'' seeds on basta agar plates (See photos [http://2010.igem.org/Team:Harvard/results]).<br><br>
 +
 
 +
Confirmation pending: Function of the ENTCUP2 promoter will be tested by checking for expression for several BioBrick parts in adult ''Arabidopsis'' plants. These parts include...
 +
* miraculin ([[Part:BBa_K382021|BBa_K382021]])
 +
* brazzein ([[Part:BBa_K382052|BBa_K382052]])
 +
* GFP knock-down amiRNA ([[Part:BBa_K382054|BBa_K382054]])
 +
 
 +
<br>
 +
Transformed seeds were plated on 5 micrograms/ml basta in Murashige and Skoog agar and we observed approximately 0.1% transgene expression and sprout survival.
 +
 
 +
[[Image:Bastaselection.jpg]]
 +
<br>
 +
Successfully transfected basta resistant ''Arabidopsis'' plants, such as the one shown below (brazzein [[Part:BBa_K382052|BBa_K382052]]), will be tested for BioBrick expression once they have grown large enough for tissue sampling:
 +
<br>
 +
 
 +
[[Image:BBa_K382002_plant.jpg|400px]]
  
 +
<br>
 +
Download the annotated sequence file [http://openwetware.org/images/d/d2/V9.gb here]<br><br>
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
 
===Usage and Biology===
 
===Usage and Biology===

Latest revision as of 17:18, 7 November 2010

pORE Expression Series Vector with BioBrick MCS, Basta resistance

Vector for transformation of plants. Cloning in E. Coli, transfer to agrobacteria, integrates in the plant genome. Kanamycin resistance in bacteria, confers Basta resistance in plants. Contains the pENTCUP2 promoter upstream of MCS for constitutive expression of gene of interest.


Confirmed functions:

  • Kan resistance in bacteria: confirmed by transformation and colony growth of E. coli (DH5alpha) and Agrobacterium tumefaciens
  • Basta resistance in plants: confirmed by selective germination of transformed Arabidopsis seeds on basta agar plates (See photos [http://2010.igem.org/Team:Harvard/results]).

Confirmation pending: Function of the ENTCUP2 promoter will be tested by checking for expression for several BioBrick parts in adult Arabidopsis plants. These parts include...


Transformed seeds were plated on 5 micrograms/ml basta in Murashige and Skoog agar and we observed approximately 0.1% transgene expression and sprout survival.

Bastaselection.jpg
Successfully transfected basta resistant Arabidopsis plants, such as the one shown below (brazzein BBa_K382052), will be tested for BioBrick expression once they have grown large enough for tissue sampling:

BBa K382002 plant.jpg


Download the annotated sequence file [http://openwetware.org/images/d/d2/V9.gb here]

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 5326
    Illegal XbaI site found at 5299
    Illegal SpeI site found at 5378
    Illegal PstI site found at 5356
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 5326
    Illegal NheI site found at 4766
    Illegal SpeI site found at 5378
    Illegal PstI site found at 5356
    Illegal NotI site found at 5341
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 5326
    Illegal BglII site found at 5212
    Illegal BglII site found at 7771
    Illegal BamHI site found at 5312
    Illegal XhoI site found at 4790
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 5326
    Illegal XbaI site found at 5299
    Illegal SpeI site found at 5378
    Illegal PstI site found at 5356
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 5326
    Illegal XbaI site found at 5299
    Illegal SpeI site found at 5378
    Illegal PstI site found at 5356
    Illegal NgoMIV site found at 625
    Illegal NgoMIV site found at 749
    Illegal NgoMIV site found at 2181
    Illegal NgoMIV site found at 2772
    Illegal NgoMIV site found at 7220
    Illegal AgeI site found at 341
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 7241