Difference between revisions of "Part:BBa K5034201"
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<partinfo>BBa_K5034201 SequenceAndFeatures</partinfo> | <partinfo>BBa_K5034201 SequenceAndFeatures</partinfo> | ||
| − | + | ===Origin=== | |
| + | It's antibiotic-resistant derivatives of the broad-host-range (bhr) cloning vector.We get the pBBR1MCS-2 plasmid on the addgene, and add a terminator rrnBT1-T7Te(BBa-B0015) to it. | ||
===Experimental Characterization and results=== | ===Experimental Characterization and results=== | ||
| − | We performed double enzyme digestion on the plasmid and obtained a fragment of approximately 5000bp(Fig. | + | We performed double enzyme digestion on the plasmid and obtained a fragment of approximately 5000bp(Fig.2) |
<html> | <html> | ||
<div align="center"> | <div align="center"> | ||
<img style="width:50%;height:auto;" src="https://static.igem.wiki/teams/5034/results/fig23.jpg"> | <img style="width:50%;height:auto;" src="https://static.igem.wiki/teams/5034/results/fig23.jpg"> | ||
<p> | <p> | ||
| − | Figure | + | Figure 2: Fragment obtained by double enzyme digestion of plasmid backbone |
</div> | </div> | ||
</html> | </html> | ||
| − | + | We then introduce it to <i>S.oneidensis</i>. | |
| − | ===Applications=== | + | ===Chassis and Genetic Context=== |
| + | We successfully expressed in ''Shewanella onediensis'' MR-1. | ||
| + | ===Potential Applications=== | ||
1. It can be used in microbial fuel cells to study and enhance the extracellular electron transfer capabilities such as in <i>S. oneidensis</i>. | 1. It can be used in microbial fuel cells to study and enhance the extracellular electron transfer capabilities such as in <i>S. oneidensis</i>. | ||
| Line 38: | Line 41: | ||
2. It can be used as a backbone for CRISPR-based genome editing systems, enabling precise genetic modifications. | 2. It can be used as a backbone for CRISPR-based genome editing systems, enabling precise genetic modifications. | ||
| + | 3. It was used in our project to carry components related to phosphorus metabolism. Our results indicate that this component is a good backbone for carrying phosphorus metabolism related components. So it may be able to be used to solve the problems of regulating the electricity production and phosphorus accumulation of <i>S.oneidensis</i>. Thus providing the possibility for organisms to generate electricity while removing pollution. | ||
===Reference=== | ===Reference=== | ||
<i>1. Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM 2nd, Peterson KM. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene. 1995 Dec 1;166(1):175-6. doi: 10.1016/0378-1119(95)00584-1. PMID: 8529885.</i> | <i>1. Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM 2nd, Peterson KM. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene. 1995 Dec 1;166(1):175-6. doi: 10.1016/0378-1119(95)00584-1. PMID: 8529885.</i> | ||
Latest revision as of 07:46, 2 October 2024
pBBR1MCS-terminator plasmid
Contents
Description
The pBBR1MCS plasmid is a synthetic plasmid backbone used in various genetic engineering applications in microbial systems. We modified the original pBBR1MCS and added a double terminator rrnBT1-T7Te(BBa_B0015) downstream the Biobrick suffix.
Sequence and Features
This backbone consists of several parts, including promoters, terminators, resistance genes, and prefix and suffix we added.
Figure 1: Plasmid diagram of backbone
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 4981
Illegal SpeI site found at 2
Illegal PstI site found at 16
Illegal NotI site found at 9
Illegal NotI site found at 2834
Illegal NotI site found at 4987 - 21INCOMPATIBLE WITH RFC[21]Plasmid lacks a prefix.
Plasmid lacks a suffix.
Illegal EcoRI site found at 4981
Illegal BglII site found at 3580 - 23INCOMPATIBLE WITH RFC[23]Illegal prefix found at 4981
Illegal suffix found at 2 - 25INCOMPATIBLE WITH RFC[25]Illegal prefix found at 4981
Plasmid lacks a suffix.
Illegal XbaI site found at 4996
Illegal SpeI site found at 2
Illegal PstI site found at 16
Illegal NgoMIV site found at 562
Illegal NgoMIV site found at 4244
Illegal NgoMIV site found at 4527
Illegal AgeI site found at 402 - 1000INCOMPATIBLE WITH RFC[1000]Plasmid lacks a prefix.
Plasmid lacks a suffix.
Origin
It's antibiotic-resistant derivatives of the broad-host-range (bhr) cloning vector.We get the pBBR1MCS-2 plasmid on the addgene, and add a terminator rrnBT1-T7Te(BBa-B0015) to it.
Experimental Characterization and results
We performed double enzyme digestion on the plasmid and obtained a fragment of approximately 5000bp(Fig.2)
Figure 2: Fragment obtained by double enzyme digestion of plasmid backbone
Chassis and Genetic Context
We successfully expressed in Shewanella onediensis MR-1.
Potential Applications
1. It can be used in microbial fuel cells to study and enhance the extracellular electron transfer capabilities such as in S. oneidensis.
2. It can be used as a backbone for CRISPR-based genome editing systems, enabling precise genetic modifications.
3. It was used in our project to carry components related to phosphorus metabolism. Our results indicate that this component is a good backbone for carrying phosphorus metabolism related components. So it may be able to be used to solve the problems of regulating the electricity production and phosphorus accumulation of S.oneidensis. Thus providing the possibility for organisms to generate electricity while removing pollution.
Reference
1. Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM 2nd, Peterson KM. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene. 1995 Dec 1;166(1):175-6. doi: 10.1016/0378-1119(95)00584-1. PMID: 8529885.