Difference between revisions of "Part:BBa K5175034:Design"

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__NOTOC__
 
__NOTOC__
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<partinfo>BBa_K5175035 short</partinfo>
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<partinfo>BBa_K5175034 short</partinfo>
  
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<partinfo>BBa_K5175035 SequenceAndFeatures</partinfo>
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<partinfo>BBa_K5175034 SequenceAndFeatures</partinfo>
  
  
 
===Design Notes===
 
===Design Notes===
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Nothing.
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It is a composite component consisting of the T7 promoter, lac operator, target genes PETase-MHETase, fucO, aldA. It is responsible for enabling E.coli to degrade PET and increasing E.coli 's ability to efficiently utilise EG.<br><br>
 +
FAST-PETase is a machine-learning obtained PETase with properties suitable for in situ PET degradation at mild temperatures and moderate pH conditions.However, the main product of PETase degradation of PET is MHET, and the MHET intermediate tends to bind tightly to PET degrading enzyme in a non-catalytic pose, which leads to the inhibition of PET degrading enzyme. Therefore, an efficient MHET hydrolase is needed to degrade the intermediate product in time to further depolymerise MHET into its monomers TPA and EG.<br><br>
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We chose fucO as the gene for L-1,2-propanediol oxidoreductase and aldA as the gene for aldehyde dehydrogenase A. L-1,2-propanediol oxidoreductase is an iron-dependent group III dehydrogenase, and aldehyde dehydrogenase A is an enzyme with a relatively broad substrate specificity for small hydroxyaldehyde substrates. EG is first converted in E.coli to glycolaldehyde (GLA) by L-1,2 -propylene glycol oxidoreductase, which is subsequently converted to glycolic acid (GA) by aldehyde dehydrogenase A. GA can be metabolised by condensation with acetyl coenzyme A via the glyoxalate shunt to form malic acid.
  
  
  
 
===Source===
 
===Source===
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MHETase, PETase are from <i>Ideonella sakaiensis</i> 201-F6. fucO, aldA are from <i>E.coli</i>.
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<i>E.coli, Ideonella sakaiensis</i>
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===References===
 
===References===
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[1] LU H, DIAZ D J, CZARNECKI N J, et al. Machine learning-aided engineering of hydrolases for PET depolymerization [J]. Nature, 2022, 604(7907): 662-7.<br><br>
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[2] ZHANG J, WANG H, LUO Z, et al. Computational design of highly efficient thermostable MHET hydrolases and dual enzyme system for PET recycling [J]. Communications Biology, 2023, 6(1): 1135.<br><br>
 +
 +
[3] ZHANG Y, HESS H. Toward Rational Design of High-efficiency Enzyme Cascades [J]. ACS Catalysis, 2017, 7(9): 6018-27.<br><br>
 +
 +
[4] MONTELLA C, BELLSOLELL L, PéREZ-LUQUE R, et al. Crystal structure of an iron-dependent group III dehydrogenase that interconverts L-lactaldehyde and L-1,2-propanediol in <i>Escherichia coli</i> [J]. J Bacteriol, 2005, 187(14): 4957-66.<br><br>
 +
 +
[5] ZHU Y, LIN E C. Loss of aldehyde dehydrogenase in an <i>Escherichia coli</i> mutant selected for growth on the rare sugar L-galactose [J]. J Bacteriol, 1987, 169(2): 785-9.<br><br>

Latest revision as of 11:58, 2 October 2024


T7 promoter-lac operator-pelB-MHETase -G4S-FAST-PETase -T7 terminator-T7 promoter-fucO-aldA-T7 termi


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 826
    Illegal PstI site found at 1169
    Illegal PstI site found at 3117
    Illegal PstI site found at 4865
    Illegal PstI site found at 5578
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 2820
    Illegal NheI site found at 2876
    Illegal NheI site found at 5636
    Illegal PstI site found at 826
    Illegal PstI site found at 1169
    Illegal PstI site found at 3117
    Illegal PstI site found at 4865
    Illegal PstI site found at 5578
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 709
    Illegal BamHI site found at 4403
    Illegal XhoI site found at 1967
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 826
    Illegal PstI site found at 1169
    Illegal PstI site found at 3117
    Illegal PstI site found at 4865
    Illegal PstI site found at 5578
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 826
    Illegal PstI site found at 1169
    Illegal PstI site found at 3117
    Illegal PstI site found at 4865
    Illegal PstI site found at 5578
    Illegal NgoMIV site found at 166
    Illegal NgoMIV site found at 508
    Illegal NgoMIV site found at 896
    Illegal NgoMIV site found at 1259
    Illegal AgeI site found at 3833
    Illegal AgeI site found at 4034
    Illegal AgeI site found at 4675
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

It is a composite component consisting of the T7 promoter, lac operator, target genes PETase-MHETase, fucO, aldA. It is responsible for enabling E.coli to degrade PET and increasing E.coli 's ability to efficiently utilise EG.

FAST-PETase is a machine-learning obtained PETase with properties suitable for in situ PET degradation at mild temperatures and moderate pH conditions.However, the main product of PETase degradation of PET is MHET, and the MHET intermediate tends to bind tightly to PET degrading enzyme in a non-catalytic pose, which leads to the inhibition of PET degrading enzyme. Therefore, an efficient MHET hydrolase is needed to degrade the intermediate product in time to further depolymerise MHET into its monomers TPA and EG.

We chose fucO as the gene for L-1,2-propanediol oxidoreductase and aldA as the gene for aldehyde dehydrogenase A. L-1,2-propanediol oxidoreductase is an iron-dependent group III dehydrogenase, and aldehyde dehydrogenase A is an enzyme with a relatively broad substrate specificity for small hydroxyaldehyde substrates. EG is first converted in E.coli to glycolaldehyde (GLA) by L-1,2 -propylene glycol oxidoreductase, which is subsequently converted to glycolic acid (GA) by aldehyde dehydrogenase A. GA can be metabolised by condensation with acetyl coenzyme A via the glyoxalate shunt to form malic acid.


Source

MHETase, PETase are from Ideonella sakaiensis 201-F6. fucO, aldA are from E.coli.

References

[1] LU H, DIAZ D J, CZARNECKI N J, et al. Machine learning-aided engineering of hydrolases for PET depolymerization [J]. Nature, 2022, 604(7907): 662-7.

[2] ZHANG J, WANG H, LUO Z, et al. Computational design of highly efficient thermostable MHET hydrolases and dual enzyme system for PET recycling [J]. Communications Biology, 2023, 6(1): 1135.

[3] ZHANG Y, HESS H. Toward Rational Design of High-efficiency Enzyme Cascades [J]. ACS Catalysis, 2017, 7(9): 6018-27.

[4] MONTELLA C, BELLSOLELL L, PéREZ-LUQUE R, et al. Crystal structure of an iron-dependent group III dehydrogenase that interconverts L-lactaldehyde and L-1,2-propanediol in Escherichia coli [J]. J Bacteriol, 2005, 187(14): 4957-66.

[5] ZHU Y, LIN E C. Loss of aldehyde dehydrogenase in an Escherichia coli mutant selected for growth on the rare sugar L-galactose [J]. J Bacteriol, 1987, 169(2): 785-9.