Difference between revisions of "Part:BBa K5035005:Design"
 
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A0A2E5NSL8 is a corrinoid iron-sulfur-containing reductive dehalogenase produced by the Dehalococcoidia bacterium. A0A2E5NSL8 is structurally similar to enzyme A6RdhA, a corrinoid iron-sulfur-containing reductive dehalogenase capable of degrading PFOA. Because of A0A2E5NSL8's structural and familial similarity to A6RdhA, it is predicted to have similar PFOA degrading abilities.
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A0A2E5NSL8 is a corrinoid iron-sulfur-containing reductive dehalogenase produced by the Acidimicrobiaceae bacterium. A0A2E5NSL8 is structurally similar to enzyme A6RdhA, a corrinoid iron-sulfur-containing reductive dehalogenase capable of degrading PFOA. Because of A0A2E5NSL8's structural and familial similarity to A6RdhA, it is predicted to have similar PFOA degrading abilities.
  
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A hexahistidine tag for nickel column purification was added to A0A2E5NSL8.
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A0A2E5NSL8 requires sulfur, iron, and norpseudo vitamin B12 to fold properly. The 2024 IEA iGEM team successfully expressed A0A2E5NSL8 within MyTXTL and incorporated the necessary cofactors within its structure using the cofactor reconstitution protocol detailed by Nakamura et al. The Results of the team's expression of A0A2E5NSL8 are shown in the gel below.
  
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References:
 
  
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<html><center><img src = "https://static.igem.wiki/teams/5035/flowcharts-gels-graphs/protein-gel-selectedvariants-igem-2-9-19-24-1.webp" width="550"></center></html>
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<center><b>Protein gel electrophoresis of purified A0A2E5NSL8 solution shows a band at the expected size of around 46 kDa.</b></center>
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===Design Notes===
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A hexahistidine tag for nickel column purification was added to A0A2E5NSL8.
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===References===
 
https://www.uniprot.org/uniprotkb/A0A2E5NSL8/publications
 
https://www.uniprot.org/uniprotkb/A0A2E5NSL8/publications
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Nakamura, R., Obata, T., Nojima, R., Hashimoto, Y., Noguchi, K., Ogawa, T., & Yohda, M. (2018). Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. Frontiers in microbiology, 9, 1774. https://doi.org/10.3389/fmicb.2018.01774

Latest revision as of 06:00, 1 October 2024

A0A2E5NSL8 is a corrinoid iron-sulfur-containing reductive dehalogenase produced by the Acidimicrobiaceae bacterium. A0A2E5NSL8 is structurally similar to enzyme A6RdhA, a corrinoid iron-sulfur-containing reductive dehalogenase capable of degrading PFOA. Because of A0A2E5NSL8's structural and familial similarity to A6RdhA, it is predicted to have similar PFOA degrading abilities.

A0A2E5NSL8 requires sulfur, iron, and norpseudo vitamin B12 to fold properly. The 2024 IEA iGEM team successfully expressed A0A2E5NSL8 within MyTXTL and incorporated the necessary cofactors within its structure using the cofactor reconstitution protocol detailed by Nakamura et al. The Results of the team's expression of A0A2E5NSL8 are shown in the gel below.


Protein gel electrophoresis of purified A0A2E5NSL8 solution shows a band at the expected size of around 46 kDa.


Design Notes

A hexahistidine tag for nickel column purification was added to A0A2E5NSL8.

References

https://www.uniprot.org/uniprotkb/A0A2E5NSL8/publications

Nakamura, R., Obata, T., Nojima, R., Hashimoto, Y., Noguchi, K., Ogawa, T., & Yohda, M. (2018). Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. Frontiers in microbiology, 9, 1774. https://doi.org/10.3389/fmicb.2018.01774