Difference between revisions of "Part:BBa K4724021"

 
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<partinfo>BBa_K4724021 short</partinfo>
 
<partinfo>BBa_K4724021 short</partinfo>
  
The hydrophobicity of the PET surface prevents IsPETase from binding to PET, which prevents IsPETase from functioning well. By adding a hydrophobic domain CBM3 to IsPETase, the hydrophobic domain of IsPETase can bind to the hydrophobic surface of PET more easily under the force of water molecule movement.
+
The hydrophobicity of the PET surface prevents <i>Is</i>PETase from binding to PET, which prevents <i>Is</i>PETase from functioning well. By adding a hydrophobic domain CBM3 to <i>Is</i>PETase, the hydrophobic domain of <i>Is</i>PETase can bind to the hydrophobic surface of PET more easily under the force of water molecule movement.
 
<h1>Construction</h1>
 
<h1>Construction</h1>
A recombinant plasmid containing this complex element was constructed using pET-22b(+) as a vector. The recombinant plasmid was obtained by fusing IsPETase with CBM3, a hydrophobic domain with a linker, using the Gibson assembly method. The recombinant plasmid was transformed into an E.coli BL21(DE3) sensory state. Colony PCR was performed using T7 and the post primer of the amplified domain as primers as shown in Fig.1.
+
A recombinant plasmid containing this complex element was constructed using pET-22b(+) as a vector. The recombinant plasmid was obtained by fusing <i>Is</i>PETase with CBM3, a hydrophobic domain with a linker, using the Gibson assembly method. The recombinant plasmid was transformed into an <i>E.coli</i> BL21(DE3) sensory state. Colony PCR was performed using T7 and the post primer of the amplified domain as primers as shown in Fig.1.
 
https://static.igem.wiki/teams/4724/wiki/1-fig-1.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-1.png
     Fig.1 Colony PCR bands of pET22b-IsPETase-CBM3
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     Fig.1 Colony PCR bands of pET22b-<i>Is</i>PETase-CBM3
 
<h1>Characterization</h1>
 
<h1>Characterization</h1>
 
<b>1. SDS-PAGE</b>
 
<b>1. SDS-PAGE</b>
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After the protein was induced by 1 mM IPTG, we used a nickel column to purify the protein because CBM3 incorporates 6xHis Tag. After the column was equilibrated, 30 mM and 300 mM imidazole buffer were added to rinse the column, and the target protein eluted with 300 mM imidazole buffer was collected. After purification, SDS-PAGE was performed to confirm the successful expression, as shown in Fig.2.
 
After the protein was induced by 1 mM IPTG, we used a nickel column to purify the protein because CBM3 incorporates 6xHis Tag. After the column was equilibrated, 30 mM and 300 mM imidazole buffer were added to rinse the column, and the target protein eluted with 300 mM imidazole buffer was collected. After purification, SDS-PAGE was performed to confirm the successful expression, as shown in Fig.2.
 
https://static.igem.wiki/teams/4724/wiki/1-fig-2-2-fig-2-6-fig-1.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-2-2-fig-2-6-fig-1.png
     Fig.2 SDS-PAGE of IsPETase-CBM3 supernatant, starch, and purified protein after the introduction of the molecular chaperone pGro7.
+
 
 +
     Fig.2 SDS-PAGE of <i>Is</i>PETase-CBM3 supernatant, starch, and purified protein after the introduction of the molecular chaperone pGro7.
 +
 
 
M:180kDa Prestained Protein Marker
 
M:180kDa Prestained Protein Marker
 
   
 
   
7-9:IsPETase-CBM3 supernatant, precipitate, and purified enzyme solution (protein size~46kDa)
+
7-9:<i>Is</i>PETase-CBM3 supernatant, precipitate, and purified enzyme solution (protein size~46kDa)
  
 
<b>2. HPLC</b>
 
<b>2. HPLC</b>
  
After protein purification, an enzymatic reaction was performed to measure the enzyme activity. The substrate used was PET powder, which was decomposed into TPA and MHET by IsPETase, and the reaction solution was subjected to high performance liquid chromatography (HPLC), and the 6-min liquid phase result corresponded to TPA and the 8-min liquid phase result corresponded to MHET. The peak area of the product output from the liquid chromatograph was converted into the concentration of the product through a standardized line, as shown in Fig.3.
+
After protein purification, an enzymatic reaction was performed to measure the enzyme activity. The substrate used was PET powder, which was decomposed into TPA and MHET by <i>Is</i>PETase, and the reaction solution was subjected to high performance liquid chromatography (HPLC), and the 6-min liquid phase result corresponded to TPA and the 8-min liquid phase result corresponded to MHET. The peak area of the product output from the liquid chromatograph was converted into the concentration of the product through a standardized line, as shown in Fig.3.
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3a-2-fig-3a-3-fig-3a-4-fig-3a-5-fig-3a-6-fig-3a.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3a-2-fig-3a-3-fig-3a-4-fig-3a-5-fig-3a-6-fig-3a.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3b-2-fig-3b-3-fig-3b-4-fig-3b-5-fig-3b-6-fig-3b.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3b-2-fig-3b-3-fig-3b-4-fig-3b-5-fig-3b-6-fig-3b.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3c-2-fig-3c-3-fig-3c-4-fig-3c-5-fig-3c-6-fig-3c.png
 
https://static.igem.wiki/teams/4724/wiki/1-fig-3c-2-fig-3c-3-fig-3c-4-fig-3c-5-fig-3c-6-fig-3c.png
    Fig.3 Concentrations of TPA and MHET products of 500 nM IsPETase-CBM3 reacted with PET powder for 48 h at different temperatures. (A) is the product concentration at 30°C, (B) is the product concentration at 37°C, and (C) is the product concentration at 45°C. The product concentration was determined by the reaction of 500 nM IsPETase- CBM3 with PET powder for 48 h at different temperatures.
+
 
 +
Fig.3 Concentrations of TPA and MHET products of 500 nM <i>Is</i>PETase-CBM3 reacted with PET powder for 48 h at different temperatures. (A) is the product concentration at 30°C, (B) is the product concentration at 37°C, and (C) is the product concentration at 45°C. The product concentration was determined by the reaction of 500 nM <i>Is</i>PETase- CBM3 with PET powder for 48 h at different temperatures.
 +
<h1>Conclusion</h1>
 +
At 30°C, the effect of <i>Is</i>PETase-CBM3 on PET degradation was decreased compared with that of WT.
 +
 
 +
At 37°C, the effect of <i>Is</i>PETase-CBM3 on PET degradation was not obvious compared with that of WT.
 +
 
 +
At 45°C, the effect of <i>Is</i>PETase-CBM3 on PET degradation decreased compared with WT.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 14:15, 10 October 2023


IsPETase-Linker-CBM3-6xHisTag

The hydrophobicity of the PET surface prevents IsPETase from binding to PET, which prevents IsPETase from functioning well. By adding a hydrophobic domain CBM3 to IsPETase, the hydrophobic domain of IsPETase can bind to the hydrophobic surface of PET more easily under the force of water molecule movement.

Construction

A recombinant plasmid containing this complex element was constructed using pET-22b(+) as a vector. The recombinant plasmid was obtained by fusing IsPETase with CBM3, a hydrophobic domain with a linker, using the Gibson assembly method. The recombinant plasmid was transformed into an E.coli BL21(DE3) sensory state. Colony PCR was performed using T7 and the post primer of the amplified domain as primers as shown in Fig.1. 1-fig-1.png

    Fig.1 Colony PCR bands of pET22b-IsPETase-CBM3

Characterization

1. SDS-PAGE

After the protein was induced by 1 mM IPTG, we used a nickel column to purify the protein because CBM3 incorporates 6xHis Tag. After the column was equilibrated, 30 mM and 300 mM imidazole buffer were added to rinse the column, and the target protein eluted with 300 mM imidazole buffer was collected. After purification, SDS-PAGE was performed to confirm the successful expression, as shown in Fig.2. 1-fig-2-2-fig-2-6-fig-1.png

    Fig.2 SDS-PAGE of IsPETase-CBM3 supernatant, starch, and purified protein after the introduction of the molecular chaperone pGro7.

M:180kDa Prestained Protein Marker

7-9:IsPETase-CBM3 supernatant, precipitate, and purified enzyme solution (protein size~46kDa)

2. HPLC

After protein purification, an enzymatic reaction was performed to measure the enzyme activity. The substrate used was PET powder, which was decomposed into TPA and MHET by IsPETase, and the reaction solution was subjected to high performance liquid chromatography (HPLC), and the 6-min liquid phase result corresponded to TPA and the 8-min liquid phase result corresponded to MHET. The peak area of the product output from the liquid chromatograph was converted into the concentration of the product through a standardized line, as shown in Fig.3. 1-fig-3a-2-fig-3a-3-fig-3a-4-fig-3a-5-fig-3a-6-fig-3a.png 1-fig-3b-2-fig-3b-3-fig-3b-4-fig-3b-5-fig-3b-6-fig-3b.png 1-fig-3c-2-fig-3c-3-fig-3c-4-fig-3c-5-fig-3c-6-fig-3c.png

Fig.3 Concentrations of TPA and MHET products of 500 nM IsPETase-CBM3 reacted with PET powder for 48 h at different temperatures. (A) is the product concentration at 30°C, (B) is the product concentration at 37°C, and (C) is the product concentration at 45°C. The product concentration was determined by the reaction of 500 nM IsPETase- CBM3 with PET powder for 48 h at different temperatures.

Conclusion

At 30°C, the effect of IsPETase-CBM3 on PET degradation was decreased compared with that of WT.

At 37°C, the effect of IsPETase-CBM3 on PET degradation was not obvious compared with that of WT.

At 45°C, the effect of IsPETase-CBM3 on PET degradation decreased compared with WT.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 56
    Illegal PstI site found at 933
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 56
    Illegal PstI site found at 933
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 790
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 56
    Illegal PstI site found at 933
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 56
    Illegal PstI site found at 933
    Illegal NgoMIV site found at 891
    Illegal AgeI site found at 546
  • 1000
    COMPATIBLE WITH RFC[1000]