Difference between revisions of "Part:BBa K4800012"
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− | SgRNA, | + | SgRNA, which is small guide RNA, is an important component of the CRISPR knockdown system. The N20 sequence of the ackA-pta sgRNA was derived from the ackA and pta genes and could be localised to the acka-pta gene in the <i>Escherichia coli</i> NT1003 genome to assist the Cas9 protein in silencing the gene. |
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+ | <html lang="en"> | ||
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+ | <meta http-equiv="X-UA-Compatible" content="IE=edge"> | ||
+ | <meta name="viewport" content="width=device-width, initial-scale=1.0"> | ||
+ | <title>Document</title> | ||
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+ | <body> | ||
+ | <p style="font-size: 150%; font-weight: bold;">Build: | ||
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+ | <p><center><img src="https://static.igem.wiki/teams/4800/wiki/parts/acka-pta-sgrna.png" width="50%" height="50%"></center></p> | ||
+ | <div align="center"> | ||
+ | <strong>Fig1. ackA-pta sgRNA</strong> | ||
+ | </div> | ||
+ | <p>We designed the N20 sequence of ackA-pta by using the CHOPCHOP website (http://chopchop.cbu.uib.no), synthesized them on primers and ligated the N20 into the pTarget-sgRNA plasmid by means of PCR. | ||
+ | </p> | ||
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+ | </body> | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K4800012 SequenceAndFeatures</partinfo> | <partinfo>BBa_K4800012 SequenceAndFeatures</partinfo> |
Latest revision as of 12:25, 12 October 2023
ackA-pta sgRNA
SgRNA, which is small guide RNA, is an important component of the CRISPR knockdown system. The N20 sequence of the ackA-pta sgRNA was derived from the ackA and pta genes and could be localised to the acka-pta gene in the Escherichia coli NT1003 genome to assist the Cas9 protein in silencing the gene.
Build:
![](https://static.igem.wiki/teams/4800/wiki/parts/acka-pta-sgrna.png)
Fig1. ackA-pta sgRNA
We designed the N20 sequence of ackA-pta by using the CHOPCHOP website (http://chopchop.cbu.uib.no), synthesized them on primers and ligated the N20 into the pTarget-sgRNA plasmid by means of PCR.
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]