Difference between revisions of "Part:BBa K4907137"
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===Biology=== | ===Biology=== | ||
MipA, a surface display protein that can anchor to the membrane surface of <i>E. coli</i>, belongs to the MipA/OmpV family. The current study shows that MipA is expressed and functions in strains of both <i>E. coli</i> K12 and B strains.(1) By structural analysis of it, the MipA protein contains five extracellular loops that form a β-sheet protruding from the cell surface. Among these loops, the third, fourth and fifth loops are primarily considered, since they likely have stronger and more stable anchoring ability in the β-barrel structure of <i>E. coli</i>. Therefore, to better exert MipA activity, we chose MV<sub>140</sub>, a derivative of MipA as the surface display protein. MV<sub>140</sub> truncated the nucleotide at position 140 at the C-terminus of MipA, which showed higher surface display efficiency compared with MipA. | MipA, a surface display protein that can anchor to the membrane surface of <i>E. coli</i>, belongs to the MipA/OmpV family. The current study shows that MipA is expressed and functions in strains of both <i>E. coli</i> K12 and B strains.(1) By structural analysis of it, the MipA protein contains five extracellular loops that form a β-sheet protruding from the cell surface. Among these loops, the third, fourth and fifth loops are primarily considered, since they likely have stronger and more stable anchoring ability in the β-barrel structure of <i>E. coli</i>. Therefore, to better exert MipA activity, we chose MV<sub>140</sub>, a derivative of MipA as the surface display protein. MV<sub>140</sub> truncated the nucleotide at position 140 at the C-terminus of MipA, which showed higher surface display efficiency compared with MipA. | ||
| − | For cellulose-binding proteins, we chose the cellulose-binding domain (CBDcex) of an extracellular glucanase derived from <sub>Celluomonas fimi</sub>. The literature suggests that CBDcex can be successfully expressed and exert a cellulose-binding function in<i>E. coli</i> JM101.(2) | + | For cellulose-binding proteins, we chose the cellulose-binding domain (CBDcex) of an extracellular glucanase derived from <sub>Celluomonas fimi</sub>. The literature suggests that CBDcex can be successfully expressed and exert a cellulose-binding function in <i>E.coli</i> JM101.(2) |
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===Usage and design=== | ===Usage and design=== | ||
Anchoring of cellulose-binding protein to the bacterial surface is an important part of the NAIADS project. Based on 2021 ([https://2021.igem.org/Team:XMU-China SALAGE]) and 2022 ([https://2022.igem.wiki/xmu-china/index.html OMEGA]) project of XMU-China, we further refined the bacterial surface display system. We chose MV140 as the surface display protein which will connect the cellulose binding protein (<partinfo>BBa_K4907027</partinfo>) on the bacterial surface. Cellulose-binding protein will bind to the cellulose of plant roots, thus allowing the engineered bacteria to adsorb and perform functions around the roots. | Anchoring of cellulose-binding protein to the bacterial surface is an important part of the NAIADS project. Based on 2021 ([https://2021.igem.org/Team:XMU-China SALAGE]) and 2022 ([https://2022.igem.wiki/xmu-china/index.html OMEGA]) project of XMU-China, we further refined the bacterial surface display system. We chose MV140 as the surface display protein which will connect the cellulose binding protein (<partinfo>BBa_K4907027</partinfo>) on the bacterial surface. Cellulose-binding protein will bind to the cellulose of plant roots, thus allowing the engineered bacteria to adsorb and perform functions around the roots. | ||
This composite part was constructed on the pSB1C3 to express the mv <sub>140</sub>-linker-cbm-his tag (<partinfo>BBa_K4907029</partinfo>) induced by <i>L</i>-arabinose. We transformed this plasmid into <i>E.coli</i> DH10β to further verify the surface display efficiency of MV<sup>140</sup>. | This composite part was constructed on the pSB1C3 to express the mv <sub>140</sub>-linker-cbm-his tag (<partinfo>BBa_K4907029</partinfo>) induced by <i>L</i>-arabinose. We transformed this plasmid into <i>E.coli</i> DH10β to further verify the surface display efficiency of MV<sup>140</sup>. | ||
| − | <b>Fig. 1 Graphic description of the | + | <center><html><img src="https://static.igem.wiki/teams/4907/wiki/parts/wei-hu/i0500-b0034-mv140-linker-cbm-his-tag-b0015-1.png" width="400px"></html></center> |
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| + | <center><b>Fig. 1 Graphic description of the MV<sup>140</sup> surface display system in NAIADS project.</b></center> | ||
===Characterization=== | ===Characterization=== | ||
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When constructing this circuit, colony PCR and gene sequencing were used to verify that the transformatants were correct. Target bands (2515 bp) can be observed at the position between 2000 and 3000 bp (Fig. 2). | When constructing this circuit, colony PCR and gene sequencing were used to verify that the transformatants were correct. Target bands (2515 bp) can be observed at the position between 2000 and 3000 bp (Fig. 2). | ||
| − | <b>Fig. 2 DNA gel electrophoresis of the colony PCR products of <partinfo>BBa_K4907137</partinfo>_pSB1C3.</b> | + | <center><html><img src="https://static.igem.wiki/teams/4907/wiki/parts/wei-hu/bba-k4907137.png" width="400px"></html></center> |
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| + | <center><b>Fig. 2 DNA gel electrophoresis of the colony PCR products of <partinfo>BBa_K4907137</partinfo>_pSB1C3.</b></center> | ||
====Ability of binding CBM on the surface of engineered bacteria==== | ====Ability of binding CBM on the surface of engineered bacteria==== | ||
First, we use 2% <i>L</i>-arabinose solution to induce the expression of the surface-display system, then FITC-labeled anti-His-tag antibody was added to characterize whether the displayed MV<sup>140</sup> could bind CBM on the surface of engineered bacteria. | First, we use 2% <i>L</i>-arabinose solution to induce the expression of the surface-display system, then FITC-labeled anti-His-tag antibody was added to characterize whether the displayed MV<sup>140</sup> could bind CBM on the surface of engineered bacteria. | ||
| − | <b>Fig. 3 The results of immunofluorescence to probe the binding event on the surface of engineered bacteria.(p = 0.003578 )</b> | + | <center><html><img src="https://static.igem.wiki/teams/4907/wiki/parts/wei-hu/mv140-cbm.png" width="400px"></html></center> |
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| + | <center><b>Fig. 3 The results of immunofluorescence to probe the binding event on the surface of engineered bacteria.(p = 0.003578 ,<i>p</i>-value: no significance (ns), 0.0332 (*), 0.0021 (**), 0.0002 (***), <0.0001 (****).)</b></center> | ||
The ratio of fluorescence intensity (λ<sub>Ex</sub> = 492 nm, λ<sub>Em</sub> = 518 nm) to OD<sub>600</sub> of <i>E. coli</i> containing the surface-display system is higher than that of negative control (not express the surface-display system) (Fig. 3), which indicates that our surface display system can successfully display CBM on the surface of bacteria. | The ratio of fluorescence intensity (λ<sub>Ex</sub> = 492 nm, λ<sub>Em</sub> = 518 nm) to OD<sub>600</sub> of <i>E. coli</i> containing the surface-display system is higher than that of negative control (not express the surface-display system) (Fig. 3), which indicates that our surface display system can successfully display CBM on the surface of bacteria. | ||
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2. E. Ong, N. R. Gilkes, R. C. Miller, Jr., R. A. Warren, D. G. Kilburn, The cellulose-binding domain (CBD(Cex)) of an exoglucanase from <i>Cellulomonas fimi</i>: production in <i>Escherichia coli</i> and characterization of the polypeptide. <i>Biotechnol Bioeng</i> <b>42</b>, 401-409 (1993). | 2. E. Ong, N. R. Gilkes, R. C. Miller, Jr., R. A. Warren, D. G. Kilburn, The cellulose-binding domain (CBD(Cex)) of an exoglucanase from <i>Cellulomonas fimi</i>: production in <i>Escherichia coli</i> and characterization of the polypeptide. <i>Biotechnol Bioeng</i> <b>42</b>, 401-409 (1993). | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
Latest revision as of 10:16, 11 October 2023
I0500-B0034-mv140-linker-cbm-his tag-B0015
Biology
MipA, a surface display protein that can anchor to the membrane surface of E. coli, belongs to the MipA/OmpV family. The current study shows that MipA is expressed and functions in strains of both E. coli K12 and B strains.(1) By structural analysis of it, the MipA protein contains five extracellular loops that form a β-sheet protruding from the cell surface. Among these loops, the third, fourth and fifth loops are primarily considered, since they likely have stronger and more stable anchoring ability in the β-barrel structure of E. coli. Therefore, to better exert MipA activity, we chose MV140, a derivative of MipA as the surface display protein. MV140 truncated the nucleotide at position 140 at the C-terminus of MipA, which showed higher surface display efficiency compared with MipA. For cellulose-binding proteins, we chose the cellulose-binding domain (CBDcex) of an extracellular glucanase derived from Celluomonas fimi. The literature suggests that CBDcex can be successfully expressed and exert a cellulose-binding function in E.coli JM101.(2)
Usage and design
Anchoring of cellulose-binding protein to the bacterial surface is an important part of the NAIADS project. Based on 2021 (SALAGE) and 2022 (OMEGA) project of XMU-China, we further refined the bacterial surface display system. We chose MV140 as the surface display protein which will connect the cellulose binding protein (BBa_K4907027) on the bacterial surface. Cellulose-binding protein will bind to the cellulose of plant roots, thus allowing the engineered bacteria to adsorb and perform functions around the roots. This composite part was constructed on the pSB1C3 to express the mv 140-linker-cbm-his tag (BBa_K4907029) induced by L-arabinose. We transformed this plasmid into E.coli DH10β to further verify the surface display efficiency of MV140.
Characterization
Agarose gel electrophoresis (AGE)
When constructing this circuit, colony PCR and gene sequencing were used to verify that the transformatants were correct. Target bands (2515 bp) can be observed at the position between 2000 and 3000 bp (Fig. 2).
Ability of binding CBM on the surface of engineered bacteria
First, we use 2% L-arabinose solution to induce the expression of the surface-display system, then FITC-labeled anti-His-tag antibody was added to characterize whether the displayed MV140 could bind CBM on the surface of engineered bacteria.
The ratio of fluorescence intensity (λEx = 492 nm, λEm = 518 nm) to OD600 of E. coli containing the surface-display system is higher than that of negative control (not express the surface-display system) (Fig. 3), which indicates that our surface display system can successfully display CBM on the surface of bacteria.
Reference
1. M. J. Han, Novel Bacterial Surface Display System Based on the Escherichia coli Protein MipA. J Microbiol Biotechnol 30, 1097-1103 (2020).
2. E. Ong, N. R. Gilkes, R. C. Miller, Jr., R. A. Warren, D. G. Kilburn, The cellulose-binding domain (CBD(Cex)) of an exoglucanase from Cellulomonas fimi: production in Escherichia coli and characterization of the polypeptide. Biotechnol Bioeng 42, 401-409 (1993).
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 1205
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 1144
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 979
Illegal AgeI site found at 1969 - 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 961