Difference between revisions of "Part:BBa K4585013"

 
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 +
__NOTOC__
 +
<partinfo>BBa_K4585013 short</partinfo>
  
 +
The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid, which could express GAL4-KRAB, was used for Luciferase detection experiment. GAL4 is a protein that can find and bind UAS (upstream activation sequence). KRAB is a transcription factor that represses downstream gene expression when combined with GAL4.
 +
<html>
 +
 +
<head>
 +
           
 +
</head>
 +
       
 +
<body>
 +
<h2 class="pageContent-main__title">
 +
                <!--put tile here, <h2>title</h2>, class="pageContent-main__title" means it is the main title-->
 +
                pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS
 +
            </h2>
 +
            <div class="pageContent-main__textBox">
 +
                <!--all the content must included in this div-->
 +
                <p>The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid was obtained through homologous recombination of the KRAB homologous recombination insert (BBa_K4585003) with pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS linearized vector (BBa_K4585008).  The homologous recombination plasmid product was identified as the target product by sequencing and enzyme cutting and agarose gel electrophoresis.
 +
                </p>
 +
                <!--put text here, <p>content</p>-->
 +
            </div>
 +
            <h2 class="pageContent-main__title pageContent-main__subtitle">
 +
                <!--class="pageContent-main__title" means it is the sub title-->
 +
                1 Pattern Diagram
 +
            </h2>
 +
            <div class="pageContent-main__textBox">
 +
                <!--all the content must included in this div-->
 +
                <p style="text-align: center;">
 +
                    <img width="400px" src="https://static.igem.wiki/teams/4585/wiki/the-model-diagram-of-pgl4-35-3-ha-9-gal4uas-krab-nls.png"></p>
 +
                <br />
 +
                <!--put image's url here-->
 +
                <p style="width: 80%;text-align:center;font-size: .9rem; margin: -1rem auto 1rem auto; color: #888;">Fig.1 The model diagram of pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS</p>
 +
            </div>
 +
            <h2 class="pageContent-main__title pageContent-main__subtitle">
 +
                <!--class="pageContent-main__title" means it is the sub title-->
 +
                2 Experiment
 +
            </h2>
 +
            <h2 class="pageContent-main__title pageContent-main__subtitle">
 +
                <!--class="pageContent-main__title" means it is the sub title-->
 +
                2.1 Method
 +
            </h2>
 +
            <div class="pageContent-main__textBox">
 +
                <!--all the content must included in this div-->
 +
                <p>The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid could express GAL4-KRAB, and GAL4-KRAB could bind 9×UAS and inhibit downstream gene expression, therefore GAL4-KRAB could inhibit GnRH expression. Considering that the plasmid itself contains a 9×UAS sequence, GAL4-KRAB can also suppress its own expression.
 +
                </p>
 +
                <!--put text here, <p>content</p>-->
 +
            </div>
 +
            <h2 class="pageContent-main__title pageContent-main__subtitle">
 +
                <!--class="pageContent-main__title" means it is the sub title-->
 +
                2.2 Results
 +
            </h2>
 +
            <div class="pageContent-main__textBox">
 +
                <!--all the content must included in this div-->
 +
                <p>HEK 293T cells were transiently transfected with GAL-VP64 and GAL-KRAB plasmids, and an appropriate amount of Luciferase plasmids were transfected to simulate GnRH. The experiment showed that the GAL-VP64 plasmid could initiate the expression of GAL4-KRAB and Luciferase.
 +
                </p>
 +
                <p style="text-align: center;">
 +
                    <img width="400px" src="https://static.igem.wiki/teams/4585/wiki/biofluorescence-intensity-when-gal4-vp64-gal4-krab-400-ng.png"></p>
 +
<br />
 +
                <!--put image's url here-->
 +
                <p style="width: 80%;text-align:center;font-size: .9rem; margin: -1rem auto 1rem auto; color: #888;">Fig 2. Bioluminescence intensity when GAL4-VP64=GAL4-KRAB=400 ng</p>
 +
            </div>
 +
            <h2 class="pageContent-main__title pageContent-main__subtitle">
 +
                <!--class="pageContent-main__title" means it is the sub title-->
 +
                3 Caution
 +
            </h2>
 +
            <div class="pageContent-main__textBox">
 +
                <!--all the content must included in this div-->
 +
                <p>After sequencing and ensuring the sequence was correct, we applied it to the experiments. Store at 4℃.
 +
                </p>
 +
            </div>
 +
</body>
 +
</html>
 +
<br />
 +
<!-- -->
 +
<span class='h3bb'>Sequence and Features</span>
 +
<partinfo>BBa_K4585013 SequenceAndFeatures</partinfo>
 +
 +
 +
<!-- Uncomment this to enable Functional Parameter display
 +
===Functional Parameters===
 +
<partinfo>BBa_K4585013 parameters</partinfo>
 +
<!-- -->

Latest revision as of 03:40, 9 October 2023

pGL4.35-3XHA-9XGAL4UAS-KRAB-NLS

The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid, which could express GAL4-KRAB, was used for Luciferase detection experiment. GAL4 is a protein that can find and bind UAS (upstream activation sequence). KRAB is a transcription factor that represses downstream gene expression when combined with GAL4.

pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS

The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid was obtained through homologous recombination of the KRAB homologous recombination insert (BBa_K4585003) with pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS linearized vector (BBa_K4585008). The homologous recombination plasmid product was identified as the target product by sequencing and enzyme cutting and agarose gel electrophoresis.

1 Pattern Diagram


Fig.1 The model diagram of pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS

2 Experiment

2.1 Method

The pGL4.35-3×HA-9×GAL4UAS-KRAB-NLS plasmid could express GAL4-KRAB, and GAL4-KRAB could bind 9×UAS and inhibit downstream gene expression, therefore GAL4-KRAB could inhibit GnRH expression. Considering that the plasmid itself contains a 9×UAS sequence, GAL4-KRAB can also suppress its own expression.

2.2 Results

HEK 293T cells were transiently transfected with GAL-VP64 and GAL-KRAB plasmids, and an appropriate amount of Luciferase plasmids were transfected to simulate GnRH. The experiment showed that the GAL-VP64 plasmid could initiate the expression of GAL4-KRAB and Luciferase.


Fig 2. Bioluminescence intensity when GAL4-VP64=GAL4-KRAB=400 ng

3 Caution

After sequencing and ensuring the sequence was correct, we applied it to the experiments. Store at 4℃.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 177
    Illegal XbaI site found at 138
    Illegal XbaI site found at 216
    Illegal SpeI site found at 4980
    Illegal PstI site found at 182
    Illegal PstI site found at 1611
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 177
    Illegal SpeI site found at 4980
    Illegal PstI site found at 182
    Illegal PstI site found at 1611
    Illegal NotI site found at 203
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 177
    Illegal BglII site found at 4743
    Illegal XhoI site found at 210
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 177
    Illegal XbaI site found at 138
    Illegal XbaI site found at 216
    Illegal SpeI site found at 4980
    Illegal PstI site found at 182
    Illegal PstI site found at 1611
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 177
    Illegal XbaI site found at 138
    Illegal XbaI site found at 216
    Illegal SpeI site found at 4980
    Illegal PstI site found at 182
    Illegal PstI site found at 1611
    Illegal NgoMIV site found at 721
    Illegal NgoMIV site found at 2062
    Illegal NgoMIV site found at 2347
    Illegal AgeI site found at 274
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 3875
    Illegal BsaI.rc site found at 5613
    Illegal SapI site found at 2792
    Illegal SapI.rc site found at 1911
    Illegal SapI.rc site found at 2121