Difference between revisions of "Part:BBa K4719023"

 
 
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<partinfo>BBa_K4719023 short</partinfo>
 
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K4719023 SequenceAndFeatures</partinfo>
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<h2>Introduction</h2>
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<b>Vilnius-Lithuania iGEM 2023</b> team's goal was to create <b> synthetic biology tools for <i>in vivo</i> alterations of <i>Komagataeibacter xylinus</i> bacterial cellulose polymer composition</b>. Firstly, we chose to produce a <b>cellulose-chitin copolymer</b> that would later be deacetylated, creating <b>bacterial cellulose-chitosan</b>. This polymer is an easily modifiable platform when compared to bacterial cellulose. The enhanced chemical reactivity of the bacterial cellulose-chitosan polymer allows for specific functionalizations in the biomedicine field, such as scaffold design. As a second approach, we designed <b>indigo-dyed cellulose</b> that could be used as a green chemistry way to apply cellulose in the textile industry. Lastly, we have achieved a of <b>bacterial cellulose and polyhydroxybutyrate (PHB) composite</b>, which is synthesized by <i>K. xylinus</i>.
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The FRF-linker is constituted of three parts: 2 flexible ends and a rigid middle section. The initial version of this linker was generated with our software and was later curated manually. The graph for the flexibility profile is listed below.
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<h2>Usage and Biology</h2>
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This part is used in <a href=https://parts.igem.org/Part:BBa_K4719019> BBa_K4719019</a>, <a href=https://parts.igem.org/Part:BBa_K4719020> BBa_K4719020</a>. FRF linker is a synthetic linker generated by Vilnius-Lithuania 2023 software. The FRF-linker is constituted of three parts: 2 flexible ends and a rigid middle section. The initial version of this linker was generated with our software and was later curated manually. The graph for the flexibility profile is listed below.  
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<center><img src = "https://static.igem.wiki/teams/4719/wiki/partai/frf-dfi.png" style = "width:400px;"></center>
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<figcaption><center><b>Figure 1:</b> Graph of linker rigidity, low DFI means ridig section, while high DFI is flexible section.</center></figcaption>
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===Usage and Biology===
 
===Usage and Biology===
  
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Latest revision as of 21:08, 9 October 2023


Flexible Rigid Flexible (FRF) linker
Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 73
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Introduction

Vilnius-Lithuania iGEM 2023 team's goal was to create synthetic biology tools for in vivo alterations of Komagataeibacter xylinus bacterial cellulose polymer composition. Firstly, we chose to produce a cellulose-chitin copolymer that would later be deacetylated, creating bacterial cellulose-chitosan. This polymer is an easily modifiable platform when compared to bacterial cellulose. The enhanced chemical reactivity of the bacterial cellulose-chitosan polymer allows for specific functionalizations in the biomedicine field, such as scaffold design. As a second approach, we designed indigo-dyed cellulose that could be used as a green chemistry way to apply cellulose in the textile industry. Lastly, we have achieved a of bacterial cellulose and polyhydroxybutyrate (PHB) composite, which is synthesized by K. xylinus.

Usage and Biology

This part is used in BBa_K4719019, BBa_K4719020. FRF linker is a synthetic linker generated by Vilnius-Lithuania 2023 software. The FRF-linker is constituted of three parts: 2 flexible ends and a rigid middle section. The initial version of this linker was generated with our software and was later curated manually. The graph for the flexibility profile is listed below.
Figure 1: Graph of linker rigidity, low DFI means ridig section, while high DFI is flexible section.