Difference between revisions of "Part:BBa K4195016"

Latest revision as of 10:17, 13 October 2022

LMT sp-his-linker-edl060

LMT is a signal peptide from the lytic murein transglycosylase of Vibrio natriegens, his-tag enable us to purify the linking protein. LMT here represents a signal peptide used to secrete the protein to the periplasm. edl060 is a gene encodes the endolysin Lysqdvp001 to lyse Vibrio parahaemolyticus. This part is used to verify whether the outer-membrane vesicles can achieve horizontal gene transfer and whether Lysqdvp001 can lyse Vibrio parahaemolyticus.

Usage

In order to make bond with secondary antibody to detect the produce of Lysqdvp001 as a signal showing successful transformation, we added a his-tag (6*His) at the N-terminal of Lysqdvp001. And to reduce the possibility that the his-tag may affect the function of Lysqdvp001, we added a linker between his-tag and Lysqdvp001. Then we assemble the inducible promoter (BBa_I0500), the part (LMT sp-his-linker-edl060) and the double terminator (BBa_B0015) on the expression vector pUC57-Simple to get the composite part BBa_K4195115 by standard assembly. The constructed plasmids were transformed into E. coli DH5α and BL21(DE3), then the positive transformants were selected by ampicillin and confirmed by colony PCR and sequencing. After a successful construction was confirmed, we carried out outer membrane (OMVs) extraction to obtain OMVs we need to incubate with Vibrio alginolyticus. After incubation and spreading plates with the incubated bacteria culture. The transformation efficiency was verify by colony PCR. The positive colonies were cultivated and each were divided into two groups. Aliquots of culture were plated out on LB agar plates containing ampicillin to verify the killing effect of Lysqdvp001 on Vibrio alginolyticus. As induced by L-arabinose, experimental group are divided by whether the plate contains L-arabinose or not.

Biology

Lysqdvp001

Lysqdvp001 is an enzyme called endolysin which encoded by gene edl060 from bacteriophage qdvp001 with specificity for Vibrio parahaemolyticus that degrade the peptidoglycan cell wall of Vibrio parahaemolyticus (1).

LMT sp

Lytic murein transglycosylase (LMT) is an enzyme which is able to degrade murein, a component of cell wall of bacteria. There are two kinds of LMTs existing in E. coli: the membrane-binding one and the soluble one. The gene coding LMT homolog is also incorporated in the genome of Vibrio natriegens. The LMT signal peptide (named LMT in our parts) is from the LMT homolog, which can lead the fused protein secreted out of Vibrio natriegens and E. coli.

Characterization

1.Agarose Gel Electrophoresis

When we were constructing this circuit, regular PCR was used to certify the plasmid was correct. We got the target bands (Fig. 1)(2250 bp) at the position between 2000bp and 3000bp.

Fig. 1 DNA gel electrophoresis of the colony PCR products of BBa_K4195115_pUC57-Simple. Target bands can be observed at the position between 2000 bp and 3000 bp.

2.OMVs extraction and plasmids packaging verification

The positive colony was cultivated to extract OMVs by hypervesiculation. After extraction, some OMVs were used to PCR to verify if there were target plasmids (Fig. 2) packaging in. The target bands(1524bp) can be observed at the position between 1500bp and 2000bp. And to verify if there's any bacteria remaining in the OMVs extraction, agar spot test was applied.

Fig. 2 Verification of OMV’s ability to load plasmid. a Solid medium plate of agar spot test. b The result of OMV PCR. Contained plasmid is BBa_I0500_pSB1C3.

Fig. 3 Agar spot test of OMVs. b Solid medium plate of agar spot test containing BBa_K4195115.

3.Incubation

The incubation experiment of OMVs with Vibrio alginolyticus is performed to verify the ability of OMVs enveloping plasmids to transform plasmids. We incubate OMVs with Vibrio alginolyticus for about 12 h, and then dilute the incubation product with LB medium added with ampicillin to 10² times and 10⁴ times. The diluted bacteria culture was plated out LB agar plates containing ampicillin. Incubate overnight and observe the colonies on the plate.

4.Transformation verification

Regular PCR was used to certify the plasmid was correct. We got the target bands (Fig. 3)(2250 bp) at the position between 2000bp and 3000bp.

Fig. 4 DNA gel electrophoresis of the colony PCR products of BBa_K4195115_pUC57-Simple. Target bands can be observed at the position between 2000bp and 3000bp.

5.Killing effect verification

The positive colonies were cultivated and each were divided into two groups. Aliquots of culture were plated out on LB agar plates containing ampicillin to verify the killing effect of Lysqdvp001 on Vibrio alginolyticus. As induced by arabinose, experimental group are divided by whether the plate contains arabinose or not. After 9 h cultivation, the result of agar spot test was obserbed and the CFU was counted (Fig. 5).

Fig. 5 The result of killing effect verification. The groups are cultivated from 4 different colonies. Group 1 is cultivated from colony without a correct band so that it serves as control group. Group 2, group 3 and group 4 are colonies with correct bands and serve as experimental groups.

Reference

1. Wang W, Li M, Lin H, Wang J, Mao X. The Vibrio parahaemolyticus-infecting bacteriophage qdvp001: genome sequence and endolysin with a modular structure. Arch Virol. 161(10):2645-52.(2016).

2. Meng Q, Tian X, Jiang B, Zhou L, Chen J, Zhang T. Characterization and enhanced extracellular overexpression of a new salt-activated alginate lyase. J Sci Food Agric. 101(12):5154-5162. (2021).

Sequence and Features