Difference between revisions of "Part:BBa K4438164"

 
 
(One intermediate revision by the same user not shown)
Line 3: Line 3:
 
<partinfo>BBa_K4438164 short</partinfo>
 
<partinfo>BBa_K4438164 short</partinfo>
  
−
FASTmiR stands for Fluorescence Aptamer Sensor For Tracking miRNAs. It is an RNA-based sensor for in-vitro quantification of miRNAs. This part is the expression cassette for BBa_K4438104 with BBa_J64997 upstream.  FASTmiR-222-D5_p, after transcription, binds to miR-222, the transcription product of BBa_K4438500. The binding of these to RNAs will lead to the revelation of a binding site for DFHBI, a fluorophore, where it gets trapped and shows fluorescence.
+
FASTmiR stands for Fluorescence Aptamer Sensor For Tracking miRNAs. It is an RNA-based sensor for in-vitro quantification of miRNAs. This part is the expression cassette for <partinfo>BBa_K4438104</partinfo> with <partinfo>BBa_J64997</partinfo> upstream.  FASTmiR-222-D5_p, after transcription, binds to miR-222, the transcription product of <partinfo>BBa_K4438150</partinfo>. The binding of these to RNAs will lead to the revelation of a binding site for DFHBI, a fluorophore, where it gets trapped and shows fluorescence.
  
−
<!-- Add more about the biology of this part here
 
−
===Usage and Biology===
 
  
 +
===Usage and Biology===
 +
This part can be used for the detection of miR-222, which proves to be a biomarker for many diseases. The promoter sequence, in the beginning, enhances its usage in both in-vivo and in-vitro conditions. The OFF(A) and ON(B) structure for the sensor was generated as given:
 +
[[File:T--IISER-Tirupati_India--miRNA_222_5.png]]
 
<!-- -->
 
<!-- -->
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
Line 17: Line 18:
 
<partinfo>BBa_K4438164 parameters</partinfo>
 
<partinfo>BBa_K4438164 parameters</partinfo>
 
<!-- -->
 
<!-- -->
 +
===Notes===
 +
The split position of the complementary sequence in the sensor is  ACCCAGT……AGCCAGAGTGAGCT
 +
 +
===References===
 +
Huang, K., Doyle, F., Wurz, Z. E., Tenenbaum, S. A., Hammond, R. K., Caplan, J. L., & Meyers, B. C. (2017). FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs. Nucleic acids research, 45(14), e130-e130

Latest revision as of 08:13, 12 October 2022


FASTmiR-222-D5_p

FASTmiR stands for Fluorescence Aptamer Sensor For Tracking miRNAs. It is an RNA-based sensor for in-vitro quantification of miRNAs. This part is the expression cassette for BBa_K4438104 with BBa_J64997 upstream. FASTmiR-222-D5_p, after transcription, binds to miR-222, the transcription product of BBa_K4438150. The binding of these to RNAs will lead to the revelation of a binding site for DFHBI, a fluorophore, where it gets trapped and shows fluorescence.


Usage and Biology

This part can be used for the detection of miR-222, which proves to be a biomarker for many diseases. The promoter sequence, in the beginning, enhances its usage in both in-vivo and in-vitro conditions. The OFF(A) and ON(B) structure for the sensor was generated as given: T--IISER-Tirupati India--miRNA 222 5.png Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal SpeI site found at 66
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal SpeI site found at 66
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal SpeI site found at 66
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal SpeI site found at 66
  • 1000
    COMPATIBLE WITH RFC[1000]


Notes

The split position of the complementary sequence in the sensor is ACCCAGT……AGCCAGAGTGAGCT

References

Huang, K., Doyle, F., Wurz, Z. E., Tenenbaum, S. A., Hammond, R. K., Caplan, J. L., & Meyers, B. C. (2017). FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs. Nucleic acids research, 45(14), e130-e130