Difference between revisions of "Part:BBa K4193004:Design"

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===Design Notes===
 
===Design Notes===
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the Skn7 regulated synthetic promoter (the SSRE promoter) form cytokinin-mediated quorum sensing circuits from Arabidopsis thaliana
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Cytokinin isopentenyladenine (IP), as quorum sensing molecule, is the product of ATP catalyzed by AtlPT4. When the signal molecule IP reaches a certain concentration, it activates the SSRE promoter and increases the expression of production gene controlled by SSRE promoter in our experiment, to better characterize SSRE promoter and quorum sensing circuit, we put eGFP gene at the downstream of SSRE promoter.
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Figure1.The signal pathway of IP-mediated quorum sensing
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We successfully introduced cytokinin-mediated quorum sensing circuit into the genome of Aureobasidium  melanogenum P16. To characterize this circuit and SSRE promoter, we added different concentration of IP and introduced eGFP at the downstream of SSRE promoter. We measured the fluorescence to figure out the dynamic regulation range.
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Figure2.Gel electrophoresis results of P16 genome amplifying AtCRE1 gene (Lane1), transformed strain genome amplifying AtCRE1 (Lane2), P16 genome amplifying PTP2+eGFP (Lane3) and transformed strain genome amplifying PTP2+eGFP (Lane 4)
  
 
===Source===
 
===Source===

Latest revision as of 10:41, 12 October 2022


SSRE promoter


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal XbaI site found at 239
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal XbaI site found at 239
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal XbaI site found at 239
    Illegal NgoMIV site found at 6
    Illegal NgoMIV site found at 46
    Illegal NgoMIV site found at 86
    Illegal NgoMIV site found at 126
    Illegal AgeI site found at 16
    Illegal AgeI site found at 56
    Illegal AgeI site found at 96
    Illegal AgeI site found at 136
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

Cytokinin isopentenyladenine (IP), as quorum sensing molecule, is the product of ATP catalyzed by AtlPT4. When the signal molecule IP reaches a certain concentration, it activates the SSRE promoter and increases the expression of production gene controlled by SSRE promoter in our experiment, to better characterize SSRE promoter and quorum sensing circuit, we put eGFP gene at the downstream of SSRE promoter.

Figure1.The signal pathway of IP-mediated quorum sensing

We successfully introduced cytokinin-mediated quorum sensing circuit into the genome of Aureobasidium melanogenum P16. To characterize this circuit and SSRE promoter, we added different concentration of IP and introduced eGFP at the downstream of SSRE promoter. We measured the fluorescence to figure out the dynamic regulation range.

Figure2.Gel electrophoresis results of P16 genome amplifying AtCRE1 gene (Lane1), transformed strain genome amplifying AtCRE1 (Lane2), P16 genome amplifying PTP2+eGFP (Lane3) and transformed strain genome amplifying PTP2+eGFP (Lane 4)

Source

synthesize from company

References

Yang, X., Liu, J., Zhang, J., Shen, Y., Qi, Q., Bao, X. and Hou, J. (2021). Quorum sensing-mediated protein degradation for dynamic metabolic pathway control in Saccharomyces cerevisiae. Metabolic Engineering, 64, pp.85–94. doi:10.1016/j.ymben.2021.01.010.

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