Difference between revisions of "Part:BBa K249014"

 
(3 intermediate revisions by the same user not shown)
Line 10: Line 10:
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K249014 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K249014 SequenceAndFeatures</partinfo>
 +
 +
 +
This part was designed as an inversion device for YFP fluorescence. Upon addition of Arabinose the fluorescence of the protein was expected to drop significantly.
 +
 +
Two constructs (EYFP with either N- or C-terminal 10Arg (10R) tags) were characterized by the following procedure, either in the presence or absence of 0.4% w/v arabinose.
 +
 +
Briefly, 5 mL cultures (LB + 10 mg/mL ampicillin, with or without 0.4 % w/v arabinose) were inoculated with 1 mL of previously prepared culture of E. coli DH5α containing the EYFP constructs. After 1 hour growth at 37 °C (with shaking), 1 mL of the culture was harvested. Cells were centrifuged (13500 g, 5 min) and resuspended in 1 mL of either 8 M urea or buffer TAKM7 (50 mM Tris-Cl pH 7.5 at room temperature, 30 mM NH4Cl, 70 mM KCl, 7 mM MgCl2) containing 1 mg/mL lysozyme. Following a 10 min incubation at room temperature, cell debris was removed by centrifugation (13500 g, 5 min). The fluorescence of the resulting clear cell debris was determined using a Varian Cary Eclipse Fluorescence Spectrophotometer in quartz cuvettes, referenced with respect to the background fluorescence of either 8 M urea or buffer TAKM7. The fluorescence of EYFP was excited at 514 nm; the fluorescence emission was measured through 5 nm slits from 520 to 600 nm. The results are summarized below:
 +
 +
 +
[[Image:YFP fluorescence.jpg]] [[Image:bar graph.jpg|400 px]]
 +
 +
Figure 1: Fluorescence of YFP constructs under native conditions. Fluorescence of buffer TAKM7 (black) and DH5α (grey) cell lysates were used as a control and show no significant fluorescence. Cells expressing C-terminal 10R tagged YFP in the absence (dark yellow) or presence (dark green) of arabinose (N-terminal 10R tagged YFP, light yellow and light green without or with arabinose respectively) showed a significant increase in fluorescence after one hour of growth.
 +
 +
Figure 2. Fluorescence of cell extracts containing R10 YFP constructs. 
 +
 +
 +
[[Image:YFP denaturing.jpg]]
 +
 +
Figure 3: Fluorescence of YFP constructs under denaturing conditions. Fluorescence of 8 M urea (black) and DH5α (grey) cell lysates were used as a control and show no significant fluorescence. Only cells expressing C-terminal 10R tagged YFP in the absence (dark yellow) of arabinose showed any fluorescence. Cells expressing C-terminal 10R tagged YFP in the presence (dark green) of arabinose (N-terminal 10R tagged YFP, light yellow and light green without or with arabinose respectively) showed no significant fluorescence under denaturing conditions. 8 M urea buffer had a slight fluorescence when excited at 514 nm.
 +
 +
These results indicate that cells express either N- or C-terminal 10R tagged YFP, as shown by an increase in the fluorescence of cleared cell lysates. This fluorescence can be removed by treating cell lysates with 8 M urea, which would denature the protein, reducing the fluorescence of the lysate. This is demonstrated by a change of 10 fluorescence units between total cellular proteins under native conditions compared to denaturing conditions.
  
  

Latest revision as of 22:05, 31 October 2009

C-terminal YFP --> Tet inverter

Arabinose repressible Tetracycline inversion of YFP with C-terminal Fusion Arganine Tag for targetting into Lumazine Microcompartment. Has a medium RBS and a double terminator.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 125
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 65
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


This part was designed as an inversion device for YFP fluorescence. Upon addition of Arabinose the fluorescence of the protein was expected to drop significantly.

Two constructs (EYFP with either N- or C-terminal 10Arg (10R) tags) were characterized by the following procedure, either in the presence or absence of 0.4% w/v arabinose.

Briefly, 5 mL cultures (LB + 10 mg/mL ampicillin, with or without 0.4 % w/v arabinose) were inoculated with 1 mL of previously prepared culture of E. coli DH5α containing the EYFP constructs. After 1 hour growth at 37 °C (with shaking), 1 mL of the culture was harvested. Cells were centrifuged (13500 g, 5 min) and resuspended in 1 mL of either 8 M urea or buffer TAKM7 (50 mM Tris-Cl pH 7.5 at room temperature, 30 mM NH4Cl, 70 mM KCl, 7 mM MgCl2) containing 1 mg/mL lysozyme. Following a 10 min incubation at room temperature, cell debris was removed by centrifugation (13500 g, 5 min). The fluorescence of the resulting clear cell debris was determined using a Varian Cary Eclipse Fluorescence Spectrophotometer in quartz cuvettes, referenced with respect to the background fluorescence of either 8 M urea or buffer TAKM7. The fluorescence of EYFP was excited at 514 nm; the fluorescence emission was measured through 5 nm slits from 520 to 600 nm. The results are summarized below:


YFP fluorescence.jpg Bar graph.jpg

Figure 1: Fluorescence of YFP constructs under native conditions. Fluorescence of buffer TAKM7 (black) and DH5α (grey) cell lysates were used as a control and show no significant fluorescence. Cells expressing C-terminal 10R tagged YFP in the absence (dark yellow) or presence (dark green) of arabinose (N-terminal 10R tagged YFP, light yellow and light green without or with arabinose respectively) showed a significant increase in fluorescence after one hour of growth.

Figure 2. Fluorescence of cell extracts containing R10 YFP constructs.


YFP denaturing.jpg

Figure 3: Fluorescence of YFP constructs under denaturing conditions. Fluorescence of 8 M urea (black) and DH5α (grey) cell lysates were used as a control and show no significant fluorescence. Only cells expressing C-terminal 10R tagged YFP in the absence (dark yellow) of arabinose showed any fluorescence. Cells expressing C-terminal 10R tagged YFP in the presence (dark green) of arabinose (N-terminal 10R tagged YFP, light yellow and light green without or with arabinose respectively) showed no significant fluorescence under denaturing conditions. 8 M urea buffer had a slight fluorescence when excited at 514 nm.

These results indicate that cells express either N- or C-terminal 10R tagged YFP, as shown by an increase in the fluorescence of cleared cell lysates. This fluorescence can be removed by treating cell lysates with 8 M urea, which would denature the protein, reducing the fluorescence of the lysate. This is demonstrated by a change of 10 fluorescence units between total cellular proteins under native conditions compared to denaturing conditions.