Difference between revisions of "Part:BBa K4390078"

Latest revision as of 13:43, 12 October 2022

C-terminal Car9-tagged MHETase

This part is not compatible with BioBrick RFC10 assembly but is compatible with the iGEM Type IIS Part standard which is also accepted by iGEM.

Usage and Biology

We designed the C-terminal Car9-tagged MHETase to make the construct functional for both MHET hydrolysis and silica immobilisation.

MHETase is an enzyme discovered in Ideonella sakaiensis at the same time as PETase (Yoshida, 2016). MHETase can hydrolyse Mono-(2-hydroxyethyl) terephthalic acid (MHET), the major product of PETase, further to terephthalic acid (TPA) and ethylene glycerol (EG). An advantage of using MHETase is that PETase degrades PET into MHET majorly, and MHET had a higher inhibitory effect on the overall hydrolysis of PET since it also originated from the other reaction product, that is, from BHET. Since TPA and EG did not affect the enzyme hydrolysis of PET, the observed inhibition caused by MHET and BHET is probably due to their ester bonds that occupy the TfCut2 substrate binding site (Pirillo, V, et al., 2021). From literature, there is a ∼60 Å long intrinsically disordered tether structure (residues 1–25) at the N-terminus of the MHETase (Pinto et al., 2021).

Car9 is a short silica-binding tag to add to the C-terminal of a protein using JUMP assembly, including a short glycine-rich linker (GSGGGS). The tag facilitates immobilisation to silica surfaces with a dissociation constant (1 µM), enabling enzyme immobilisation or purification using silica-based spin columns. The advantage of using Car9 silica tag is its small size (1.87 kDa) would introduce smaller effect to the functional enzyme activity in theory (Coyle and Baneyx, 2014).

Design

C-terminal Car9-tagged MHETase was assembled by JUMP assembly with: T7 promoter (P part)-B0034 RBS (RN part)-MHETase (O part)-[linker-Car9] (C part)-L1U1H08 (T part). All the codon is optimized for BioBrick and JUMP assembly.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

Reference

Yoshida S, Hiraga K, Takehana T, Taniguchi I, Yamaji H, Maeda Y et al. A bacterium that degrades and assimilates poly (ethylene terephthalate). Science. 2016;351(6278):1196-1199.

Pirillo V, Pollegioni L, Molla G. Analytical methods for the investigation of enzyme‐catalyzed degradation of polyethylene terephthalate. The FEBS Journal. 2021;288(16):4730-4745.

Pinto A, Ferreira P, Neves R, Fernandes P, Ramos M, Magalhães A. Reaction Mechanism of MHETase, a PET Degrading Enzyme. ACS Catalysis. 2021;11(16):10416-10428.

Coyle B, Baneyx F. A cleavable silica-binding affinity tag for rapid and inexpensive protein purification. Biotechnology and Bioengineering. 2014;111(10):2019-2026.

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K4390078 short</partinfo>
--
+'''This part is not compatible with BioBrick RFC10 assembly but is compatible with the iGEM Type IIS Part standard [[Help:Standards/Assembly/Type_IIS|which is also accepted by iGEM.]]'''
+==Usage and Biology==
+We designed the C-terminal Car9-tagged MHETase to make the construct functional for both MHET hydrolysis and silica immobilisation.
+MHETase is an enzyme discovered in Ideonella sakaiensis at the same time as PETase (Yoshida, 2016). MHETase can hydrolyse Mono-(2-hydroxyethyl) terephthalic acid (MHET), the major product of PETase, further to terephthalic acid (TPA) and ethylene glycerol (EG).
+An advantage of using MHETase is that PETase degrades PET into MHET majorly, and MHET had a higher inhibitory effect on the overall hydrolysis of PET since it also originated from the other reaction product, that is, from BHET. Since TPA and EG did not affect the enzyme hydrolysis of PET, the observed inhibition caused by MHET and BHET is probably due to their ester bonds that occupy the TfCut2 substrate binding site (Pirillo, V, et al., 2021). From literature, there is a ∼60 Å long intrinsically disordered tether structure (residues 1–25) at the N-terminus of the MHETase (Pinto et al., 2021).
+Car9 is a short silica-binding tag to add to the C-terminal of a protein using JUMP assembly, including a short glycine-rich linker (GSGGGS). The tag facilitates immobilisation to silica surfaces with a dissociation constant (1 µM), enabling enzyme immobilisation or purification using silica-based spin columns. The advantage of using Car9 silica tag is its small size (1.87 kDa) would introduce smaller effect to the functional enzyme activity in theory (Coyle and Baneyx, 2014).
+==Design==
+C-terminal Car9-tagged MHETase was assembled by JUMP assembly with: T7 promoter (P part)-B0034 RBS (RN part)-MHETase (O part)-[linker-Car9] (C part)-L1U1H08 (T part). All the codon is optimized for BioBrick and JUMP assembly.
-<!-- Add more about the biology of this part here
-===Usage and Biology===
 <!-- -->
-<span class='h3bb'>Sequence and Features</span>
+==<span class='h3bb'>Sequence and Features</span>==
 <partinfo>BBa_K4390078 SequenceAndFeatures</partinfo>
+==Reference==
+Yoshida S, Hiraga K, Takehana T, Taniguchi I, Yamaji H, Maeda Y et al. A bacterium that degrades and assimilates poly (ethylene terephthalate). Science. 2016;351(6278):1196-1199.
+Pirillo V, Pollegioni L, Molla G. Analytical methods for the investigation of enzyme‐catalyzed degradation of polyethylene terephthalate. The FEBS Journal. 2021;288(16):4730-4745.
+Pinto A, Ferreira P, Neves R, Fernandes P, Ramos M, Magalhães A. Reaction Mechanism of MHETase, a PET Degrading Enzyme. ACS Catalysis. 2021;11(16):10416-10428.
+Coyle B, Baneyx F. A cleavable silica-binding affinity tag for rapid and inexpensive protein purification. Biotechnology and Bioengineering. 2014;111(10):2019-2026.
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