Difference between revisions of "Part:BBa K4006003"
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<partinfo>BBa_K4006003 short</partinfo> | <partinfo>BBa_K4006003 short</partinfo> | ||
| − | + | ===Background=== | |
| − | + | This part includes a coding sequence for the protein ferritin codon optimized for use in the Chlamydomonas reinhardtii chloroplast. Ferritin is a large protein that takes the form of a hollow sphere, sequestering iron inside of itself. While it is extremely well known as a tool for iron sequestration, it can be used to capture multiple heavy metals. It has also been expressed within the ''Chlamydomonas reinhardtii'' chloroplast before with a notable difference in capacity for binding iron. | |
| − | + | ===Cloning into ''E. coli'' and Verification=== | |
| + | They were transformed into 5-alpha competent ''E. coli'' cells from NEB. The cloning was successful, as the positive control plate showed significantly more colonies than the negative control plate. | ||
| − | + | [[Image:T--ASU--ftnaPlates.jpg|center|thumb|700px|<b>Figure 1.</b> The plate on the left is the experimental transformation of ferritin into plasmid backbone MT-pASapI using Golden Gate Assembly. Multiple individual colonies are present on the plate, indicating successful transformation. The plate on the right is the negative control. Little to no colonies are present on the plate, indicating that there should not be high background or incomplete recombination in our experimental plate.]] | |
| − | + | This was confirmed with a restriction digest of the plasmid using XbaI and BstxI. FtnA was expected to have two bands: 4.4kb and 2.7 kb. This is a contrast to the MT-pASapI backbone, which would result in two bands of 4.4kb and 2.3kb. The gel showed three bands for all of the constructs run, the top band being undigested plasmid due to ineffective restriction digest. However, the other bands showed that the inserts contained bands of the appropriate size, and were different from the MT plasmid. | |
| − | + | [[Image:T--ASU--ftnaGel.png|center|thumb|300px|<b>Figure 2.</b> Gel electrophoresis of restriction digest with XbaI and BstXI of original pASapI plasmid and the recombinant colonies with ferritin in place of MT. Each of the picked colonies (ftNa A-D) indicate three distinct bands as compared to the pASapI's four bands. The top band on each of the constructs is undigested plasmid due to the ineffective SapI enzyme.]] | |
| − | + | ===Transformation into ''Chlamydomonas reinhardtii''=== | |
| − | === | + | |
| + | We were unable to successfully transform this construct into ''C. reinhardtii''. | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K4006003 SequenceAndFeatures</partinfo> | <partinfo>BBa_K4006003 SequenceAndFeatures</partinfo> | ||
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Latest revision as of 21:19, 21 October 2021
Ferritin
Background
This part includes a coding sequence for the protein ferritin codon optimized for use in the Chlamydomonas reinhardtii chloroplast. Ferritin is a large protein that takes the form of a hollow sphere, sequestering iron inside of itself. While it is extremely well known as a tool for iron sequestration, it can be used to capture multiple heavy metals. It has also been expressed within the Chlamydomonas reinhardtii chloroplast before with a notable difference in capacity for binding iron.
Cloning into E. coli and Verification
They were transformed into 5-alpha competent E. coli cells from NEB. The cloning was successful, as the positive control plate showed significantly more colonies than the negative control plate.
Figure 1. The plate on the left is the experimental transformation of ferritin into plasmid backbone MT-pASapI using Golden Gate Assembly. Multiple individual colonies are present on the plate, indicating successful transformation. The plate on the right is the negative control. Little to no colonies are present on the plate, indicating that there should not be high background or incomplete recombination in our experimental plate.
This was confirmed with a restriction digest of the plasmid using XbaI and BstxI. FtnA was expected to have two bands: 4.4kb and 2.7 kb. This is a contrast to the MT-pASapI backbone, which would result in two bands of 4.4kb and 2.3kb. The gel showed three bands for all of the constructs run, the top band being undigested plasmid due to ineffective restriction digest. However, the other bands showed that the inserts contained bands of the appropriate size, and were different from the MT plasmid.
Figure 2. Gel electrophoresis of restriction digest with XbaI and BstXI of original pASapI plasmid and the recombinant colonies with ferritin in place of MT. Each of the picked colonies (ftNa A-D) indicate three distinct bands as compared to the pASapI's four bands. The top band on each of the constructs is undigested plasmid due to the ineffective SapI enzyme.
Transformation into Chlamydomonas reinhardtii
We were unable to successfully transform this construct into C. reinhardtii.
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 5
Illegal SapI.rc site found at 515