Difference between revisions of "Part:BBa K3771098"
 
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<br>    This composite part consists of promoter <i>P<sub>soxS</sub></i> Mutant 3 (BBa_K2862010), genetic insulator RiboJ (BBa_K1679038), RCP (BBa_K592012), constitutive promoter J23101 (BBa_J23101), and the <i>soxR</i> gene (BBa_K223000).
 
<br>    This composite part consists of promoter <i>P<sub>soxS</sub></i> Mutant 3 (BBa_K2862010), genetic insulator RiboJ (BBa_K1679038), RCP (BBa_K592012), constitutive promoter J23101 (BBa_J23101), and the <i>soxR</i> gene (BBa_K223000).
  
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    The <i>soxR</i> and the <i>soxS</i> gene are components of the <i>soxRS</i> regulon, which is important for <i>E. coli</i> to sense and respond to the oxidants. When SoxR protein is fully oxidized, it becomes a powerful transcription activator of the <i>soxS</i> promoter (<i>P<sub>soxS</sub></i>) (up to 100-fold), leading to the expression of the downstream gene<sup>[1]</sup>. RiboJ is a genetic insulator that can increase the expression of insulated genes. RCP serves as a reporter to help us pick up the correct colony.  
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The <i>soxR</i> and the <i>soxS</i> gene are components of the <i>soxRS</i> regulon, which is important for <i>E. coli</i> to sense and respond to the oxidants. When SoxR protein is fully oxidized, it becomes a powerful transcription activator of the <i>soxS</i> promoter (<i>P<sub>soxS</sub></i>) (up to 100-fold), leading to the expression of the downstream gene<sup>[1]</sup>. RiboJ is a genetic insulator that can increase the expression of insulated genes. RCP serves as a reporter to help us pick up the correct colony.  
 
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<img src="https://2021.igem.org/wiki/images/2/29/T--NCKU_Tainan--RCP_Colony_PCR.png"​ style="width:35%;">
 
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<p align="center"> Fig.1. The electrophoresis result of colony PCR. M: Marker; Lane 1: pSAA-<i>P<sub>soxS</sub>-sfgfp</i> (990 bp);  Lane 2, 3: pSAA-<i>P<sub>soxS</sub>-RiboJ-rcp</i>-J23101-<i>soxR</i> (1103 bp).​
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<p align="center"> Fig. 1. The electrophoresis result of colony PCR. M: Marker; Lane 1: pSAA-<i>P<sub>soxS</sub>-sfgfp</i> (990 bp);  Lane 2, 3: pSAA-<i>P<sub>soxS</sub></i>-RiboJ-<i>rcp</i>-J23101-<i>soxR</i> (1103 bp).​
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<br>After the overnight incubation of <i>E. coli</i> with our plasmid, we diluted the bacteria culture and measured OD<sub>600</sub> once in a while. Until OD<sub>600</sub> reached 0.5, we added 0.5 mM paraquat, which served as an oxidative stress inducer, into the culture. We collected 1 ml culture each from the control group and the paraquat group at 2, 4, 6 hours after paraquat was added. Afterward, we conducted SDS-Page and western blot to confirm paraquat was added. Afterward, we conducted SDS-Page and western blot to confirm whether CSAD expressed successfully under oxidative stress with the regulation of SoxR and <i>P<sub>soxS</sub></i>. With the presence of SoxR, the expression level of CSAD in the paraquat group is high enough to be detected in western blot, but still insufficient to be seen on SDS-Page (Fig.2 & 3).
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<img src="https://2021.igem.org/wiki/images/2/2e/T--NCKU_Tainan--soxR-CSAD_Page.png"​ style="width:35%;">
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<p align="center"> Fig.2. The SDS-Page result. CSAD (~55 kDa); –: control; PQ: 0.1 mM paraquat.
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<img src="https://2021.igem.org/wiki/images/5/58/T--NCKU_Tainan--soxR-CSAD_WB.png"​ style="width:35%;">
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<p align="center"> Fig.3. The western blot result. CSAD (~55 kDa); –: control; PQ: 0.1 mM paraquat.
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<br>Pomposiello PJ, Demple B. Redox-operated genetic switches: the SoxR and OxyR transcription factors. Trends Biotechnol. 2001;19(3):109-114. doi:10.1016/s0167-7799(00)01542-0
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<br>1. Pomposiello PJ, Demple B. Redox-operated genetic switches: the SoxR and OxyR transcription factors. <i>Trends Biotechnol</i>. 2001;19(3):109-114. doi:10.1016/s0167-7799(00)01542-0
 
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===Usage and Biology===
 
  
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K3771098 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3771098 SequenceAndFeatures</partinfo>
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===Functional Parameters===
 
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<partinfo>BBa_K3771098 parameters</partinfo>
 
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Latest revision as of 12:47, 18 October 2021


PsoxS-Riboj-RCP-J23101-SoxR​


Description


This composite part consists of promoter PsoxS Mutant 3 (BBa_K2862010), genetic insulator RiboJ (BBa_K1679038), RCP (BBa_K592012), constitutive promoter J23101 (BBa_J23101), and the soxR gene (BBa_K223000).

The soxR and the soxS gene are components of the soxRS regulon, which is important for E. coli to sense and respond to the oxidants. When SoxR protein is fully oxidized, it becomes a powerful transcription activator of the soxS promoter (PsoxS) (up to 100-fold), leading to the expression of the downstream gene[1]. RiboJ is a genetic insulator that can increase the expression of insulated genes. RCP serves as a reporter to help us pick up the correct colony.



Usage and Biology


This composite part was ligated with the pSAA vector and transformed into E. coli. We conducted colony PCR to verify whether E. coli uptake the correct plasmid. The size of the PCR product was as expected.

Fig. 1. The electrophoresis result of colony PCR. M: Marker; Lane 1: pSAA-PsoxS-sfgfp (990 bp); Lane 2, 3: pSAA-PsoxS-RiboJ-rcp-J23101-soxR (1103 bp).​


References


1. Pomposiello PJ, Demple B. Redox-operated genetic switches: the SoxR and OxyR transcription factors. Trends Biotechnol. 2001;19(3):109-114. doi:10.1016/s0167-7799(00)01542-0


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 890
    Illegal NheI site found at 913
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]