Difference between revisions of "Part:BBa K3930027"
 
(4 intermediate revisions by 2 users not shown)
Line 8: Line 8:
  
 
<h2>Introduction</h2>
 
<h2>Introduction</h2>
−
<p>Integrative locus NSI right arm of <i>Synechococcus elongatus</i> genome comes from the plasmid pAM4951 (Taton et al. 2014). This part is flanking the insert in 3', and must be used with the integrative locus (BBa_K3930028) NSI left arm part in 5'.</p>
+
<p>This integrative locus NSI right arm of <i>Synechococcus elongatus</i> genome comes from the plasmid pAM4951 Taton et al. (2014). This part is flanking the insert in 3', and must be used with the integrative locus <a href="https://parts.igem.org/Part:BBa_K3930028" class="pr-0" target="_blank">(BBa_K3930028)</a> NSI left arm part in 5'.</p>
 
<h2>Results</h2>
 
<h2>Results</h2>
  
−
<h3>Integration of part (BBa_K3930026) into the cyanobacterium genome</h3>
+
<h3>Integration of part <a href="https://parts.igem.org/Part:BBa_K3930026" class="pr-0" target="_blank">(BBa_K3930026)</a> into the cyanobacterium genome</h3>
−
<p> The part (BBa_K3930026) was transformed into the <i>S.elongatus</i> UTEX 2973 following the triparental conjugation  protocol of Gale et al. (2019). The construction is flanked by parts (BBa_K3930027) and (BBa_K3930028). Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype.</p>
+
<p> The part <a href="https://parts.igem.org/Part:BBa_K3930026" class="pr-0" target="_blank">(BBa_K3930026)</a> was transformed into the <i>S. elongatus</i> UTEX 2973 following the triparental conjugation  protocol of Gale et al. (2019). The construction is flanked by parts (BBa_K3930027) and <a href="https://parts.igem.org/Part:BBa_K3930028" class="pr-0" target="_blank">(BBa_K3930028)</a>. Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype.</p>
 
<br>
 
<br>
 
<br>
 
<br>
Line 24: Line 24:
 
                 </div>
 
                 </div>
 
                 <b>Figure 1: </b> <b> Integration of pCONCOMBRE insert in the cyanobacterium genome</b>
 
                 <b>Figure 1: </b> <b> Integration of pCONCOMBRE insert in the cyanobacterium genome</b>
−
                 <p>pCONCOMBRE insert integration was checked by PCR visualised on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right and the NEB 1 kb DNA ladder on the left (note that a different ladder is presented on the theoretical gel)</p>
+
                 <p>pCONCOMBRE insert integration was checked by PCR visualised on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right (note that a different ladder is presented on the theoretical gel). Most expected sizes were obtained, but one amplicon for the left arm (LA) had not the right size. However, all genes from the insert were detected.</p>
 
             </div>
 
             </div>
 
         </div>
 
         </div>
Line 30: Line 30:
 
</div>
 
</div>
 
<br>
 
<br>
−
<p><b>The integrative locus NSI right arm (BBa_K3930027) coupled with the integrative locus (BBa_K3930028) NSI left arm part are functional under these experimental conditions.</b><p>
+
<p><b>We concluded that the integrative locus NSI right arm (BBa_K3930027) coupled with the integrative locus <a href="https://parts.igem.org/Part:BBa_K3930028" class="pr-0" target="_blank">(BBa_K3930028)</a> NSI left arm part is functional under these experimental conditions.</b><p>
 
<br>
 
<br>
 
<h2>References</h2>
 
<h2>References</h2>

Latest revision as of 08:42, 17 October 2021


Integrative right site in the NSI locus of the S. elongatus genome Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 441
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 441
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 441
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 441
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 651

Introduction

This integrative locus NSI right arm of Synechococcus elongatus genome comes from the plasmid pAM4951 Taton et al. (2014). This part is flanking the insert in 3', and must be used with the integrative locus (BBa_K3930028) NSI left arm part in 5'.

Results

Integration of part (BBa_K3930026) into the cyanobacterium genome

The part (BBa_K3930026) was transformed into the S. elongatus UTEX 2973 following the triparental conjugation protocol of Gale et al. (2019). The construction is flanked by parts (BBa_K3930027) and (BBa_K3930028). Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype.



Figure 1: Integration of pCONCOMBRE insert in the cyanobacterium genome

pCONCOMBRE insert integration was checked by PCR visualised on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right (note that a different ladder is presented on the theoretical gel). Most expected sizes were obtained, but one amplicon for the left arm (LA) had not the right size. However, all genes from the insert were detected.


We concluded that the integrative locus NSI right arm (BBa_K3930027) coupled with the integrative locus (BBa_K3930028) NSI left arm part is functional under these experimental conditions.


References

  1. Gale GAR, Osorio AAS, Puzorjov A, Wang B, McCormick AJ. 2019. Genetic Modification of Cyanobacteria by Conjugation Using the CyanoGate Modular Cloning Toolkit. JoVE (Journal of Visualized Experiments).(152):e60451. doi:10.3791/60451.
  2. Taton A, Unglaub F, Wright NE, Zeng WY, Paz-Yepes J, Brahamsha B, Palenik B, Peterson TC, Haerizadeh F, Golden SS, et al. 2014. Broad-host-range vector system for synthetic biology and biotechnology in cyanobacteria. Nucleic Acids Res. 42(17):e136. doi:10.1093/nar/gku673.
    3.