Difference between revisions of "Part:BBa K3791011:Design"
 
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===Source===
 
===Source===
  
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The repeat and the T7 promoter sequences were extracted from the parts registry ([https://parts.igem.org/wiki/index.php?title=Part:BBa_K2927006 BBa_K2927006]) ([https://parts.igem.org/Part:BBa_K1614000 BBa_K1614000]), whereas the spacer one was designed with the constraint that it had to be complementary to the sequence of the chloramphenicol-resistance gene aiming to be detected (as explained in its own part page: [https://parts.igem.org/Part:BBa_K3791000 BBa_K3791001]).
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The repeat and the T7 promoter sequences were extracted from the parts registry (<html><a href="https://parts.igem.org/Part:BBa_K2927006" target="_blank" onmouseover="this.style.color='#ff724a';" onmouseout="this.style.color='#ff9515';" style="color: #ff9515; text-decoration: none;">BBa_K2927006</a></html>) (<html><a href="https://parts.igem.org/Part:BBa_K1614000" target="_blank" onmouseover="this.style.color='#ff724a';" onmouseout="this.style.color='#ff9515';" style="color: #ff9515; text-decoration: none;">BBa_K1614000</a></html>), whereas the spacer one was designed with the constraint that it had to be complementary to the sequence of the chloramphenicol-resistance gene aiming to be detected (as explained in its own part page: <html><a href="https://parts.igem.org/Part:BBa_K3791001" target="_blank" onmouseover="this.style.color='#ff724a';" onmouseout="this.style.color='#ff9515';" style="color: #ff9515; text-decoration: none;">BBa_K3791001</a></html>).
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===References===
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[1] New England Biolabs. (s/f). <b>How do I design a guide RNA for use with EnGen Lba Cas12a?</b> Neb.com. From: https://international.neb.com/faqs/2018/05/03/how-do-i-design-a-guide-rna-for-use-with-engen-lba-cas12a
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Latest revision as of 23:00, 21 October 2021


gRNA Chloramphenicol construct


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The repeat sequence must be placed before the spacer sequence, that is, in the 5’ extreme. It is also required to have a length between 18 and 24 nucleotides, in this case adjusting it to a consensus G-C content of approximately 50%.

Source

The repeat and the T7 promoter sequences were extracted from the parts registry (BBa_K2927006) (BBa_K1614000), whereas the spacer one was designed with the constraint that it had to be complementary to the sequence of the chloramphenicol-resistance gene aiming to be detected (as explained in its own part page: BBa_K3791001).