Difference between revisions of "Part:BBa K4012004"

 
 
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<partinfo>BBa_K4012004 parameters</partinfo>
 
<partinfo>BBa_K4012004 parameters</partinfo>
 
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===Obtaining the pPOP6 fragment and BsaI digested verification===
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[[Image:T--AISSU_Union--partslast.jpg|thumbnail|750px|center|'''Figure 1:'''
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[https://parts.igem.org/Part:BBa_K4012004] Results of yeast toolkit plasmids enzyme-digested verification]]
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We construct pPOP6 with vector type8-pSB1K3-GFP and proceed digested verification using BsaI. According to Fig.1, we obtain two clear bands after BsaI digested, the length of the vector(1622bp) and the inserted fragments pPOP6(709bp) matched with previous expectations by compared with Marker MK8000 ladder, confirming the successful assembly of Toolkit plasmids and availability in subsequent construction.
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===pPOP6 in Level1 plasmid assembly===
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[[Image:CDS DuLAR.jpg|thumbnail|750px|center|'''Figure 2:'''
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[https://parts.igem.org/Part:BBa_K4012004] A: the construction strategy; B: results of colony PCR; C: results of sequencing analysis of coding sequence CrCPR]]
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The construction schematic of DuLAR sequence demonstrated as Fig.2. The initiation of the DuLAR sequence is done by promoter pPOP6, with termination done by tSSA1. The sequence ConL4 and ConRE are connector sequences within the Level 1 plasmid assembly. Furthermore, typr9-KVF and type9-VR are imposed to enact selection through colonies PCR, results shown in Fig.9 The band length 2500bp match with expectations. The sequence analysis results show no significant mutations or deletions, representing the success of the assembly.
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===pPOP6 in Level2 plasmid assembly===
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[[Image:yeast PCR.jpg|thumbnail|750px|center|'''Figure 3:'''
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[https://parts.igem.org/Part:BBa_K4012004] A: The results of colony PCR of upstream transformant; B: The results of colony PCR of downstream transformant; C: Construction of catechin metabolic pathway; D：Construction of naringenin metabolic pathway]]
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pPOP6 is also involved in assembly of synthesis pathway of catechin, shown by Fig.3.

Latest revision as of 13:26, 21 October 2021


pPOP6

it is a promoter that initiates the sequence that is resposible for the production of chalcone isomerase

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 714
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 3
    Illegal BsaI.rc site found at 724


Obtaining the pPOP6 fragment and BsaI digested verification

Figure 1: [1] Results of yeast toolkit plasmids enzyme-digested verification

We construct pPOP6 with vector type8-pSB1K3-GFP and proceed digested verification using BsaI. According to Fig.1, we obtain two clear bands after BsaI digested, the length of the vector(1622bp) and the inserted fragments pPOP6(709bp) matched with previous expectations by compared with Marker MK8000 ladder, confirming the successful assembly of Toolkit plasmids and availability in subsequent construction.

pPOP6 in Level1 plasmid assembly

Figure 2: [2] A: the construction strategy; B: results of colony PCR; C: results of sequencing analysis of coding sequence CrCPR

The construction schematic of DuLAR sequence demonstrated as Fig.2. The initiation of the DuLAR sequence is done by promoter pPOP6, with termination done by tSSA1. The sequence ConL4 and ConRE are connector sequences within the Level 1 plasmid assembly. Furthermore, typr9-KVF and type9-VR are imposed to enact selection through colonies PCR, results shown in Fig.9 The band length 2500bp match with expectations. The sequence analysis results show no significant mutations or deletions, representing the success of the assembly.

pPOP6 in Level2 plasmid assembly

Figure 3: [3] A: The results of colony PCR of upstream transformant; B: The results of colony PCR of downstream transformant; C: Construction of catechin metabolic pathway; D：Construction of naringenin metabolic pathway

pPOP6 is also involved in assembly of synthesis pathway of catechin, shown by Fig.3.