Difference between revisions of "Part:BBa K3726108"

Latest revision as of 14:37, 8 October 2021

5CON1(H)_NS3-up (PCC 11801)

This part is an homology 5’ connector harboring the up homology arm for the homologous recombination within the Neutral Site Nº 3 of PCC11801.

Within the Marburg Collection design, connectors are found in the upstream (5’) and downstream (3’) regions of the level 1 assemblies, flanking the transcriptional unit. This allows the further assembly of multiple transcriptional units into a level 2 genetic construct using level 1 parts flanked by different connectors. To know more about, read the design principles of Marburg Collection: https://2019.igem.org/Team:Marburg/Part_Collection.

Among other functions, connectors can also be used to include homology regions for integrative recombination in the chassis genome. This way 5’ Connector parts can harbor the up / down homology arm required for double homologous recombination.

The part has been designed in accordance with the Marburg Collection guidelines. 5’ / 3’ Connectors correspond with the parts found Upstream / Downstream of the level 1 assembled transcriptional unit.

Sequence & Features

Assembly Compatibility:

10
INCOMPATIBLE WITH RFC[10]
Illegal PstI site found at 143
Illegal PstI site found at 619
12
INCOMPATIBLE WITH RFC[12]
Illegal PstI site found at 143
Illegal PstI site found at 619
21
INCOMPATIBLE WITH RFC[21]
Illegal XhoI site found at 185
23
INCOMPATIBLE WITH RFC[23]
Illegal PstI site found at 143
Illegal PstI site found at 619
25
INCOMPATIBLE WITH RFC[25]
Illegal PstI site found at 143
Illegal PstI site found at 619
1000
INCOMPATIBLE WITH RFC[1000]
Illegal SapI.rc site found at 850

The genomic integration loci targeted by this part corresponds with a novel neutral site for Synechococcus PCC11801. This neutral site has been identified by the MADRID_UCM 2021 iGEM team as a part of their project. To know more about the discovery process visit the section Software of 4C_Fuels project. https://2021.igem.org/Team:MADRID_UCM/Software

@@ Line 1: / Line 1: @@
 __NOTOC__
-<partinfo>BBa_K3726108 short</partinfo>
+<partinfo>Bba_K3726108 short</partinfo>
+This part is an homology 5’ connector harboring the up homology arm for the homologous recombination within the Neutral Site Nº 3 of PCC11801.
+Within the Marburg Collection design, connectors are found in the upstream (5’) and downstream (3’) regions of the  level 1 assemblies, flanking the transcriptional unit. This allows the further assembly of multiple transcriptional units into a level 2 genetic construct using level 1 parts flanked by different connectors. To know more about, read the design principles of Marburg Collection: https://2019.igem.org/Team:Marburg/Part_Collection.
+Among other functions, connectors can also be used to include homology regions for integrative recombination in the chassis genome. This way 5’ Connector parts can harbor the up / down homology arm required for double homologous recombination.
+The part has been designed in accordance with the Marburg Collection guidelines. 5’ / 3’ Connectors correspond with the parts found Upstream / Downstream of the level 1 assembled transcriptional unit.
-z
 <!-- Add more about the biology of this part here
@@ Line 9: / Line 17: @@
 <!-- -->
-<span class='h3bb'>Sequence and Features</span>
+<span class='h3bb'><b>Sequence & Features</b></span>
 <partinfo>BBa_K3726108 SequenceAndFeatures</partinfo>
@@ Line 17: / Line 25: @@
 <partinfo>BBa_K3726108 parameters</partinfo>
 <!-- -->
+The genomic integration loci targeted by this part corresponds with a novel neutral site for Synechococcus PCC11801. This neutral site has been identified by the MADRID_UCM 2021 iGEM team as a part of their project. To know more about the discovery process visit the section Software of 4C_Fuels project. https://2021.igem.org/Team:MADRID_UCM/Software