Difference between revisions of "Part:BBa K3726001:Design"

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===Design Notes===
 
===Design Notes===
 
This part corresponds with the codon optimized coding sequence of PhaB^173S enzyme.
 
This part corresponds with the codon optimized coding sequence of PhaB^173S enzyme.
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Codon optimization has been performed using DeNovo DNA Software, adjusting the codon usage for high expression in Synechococcus elongatus PCC7942.
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Codon optimization has been performed using DeNovo DNA Software, adjusting the codon usage for high expression in <i>Synechococcus elongatus PCC7942</i>. In addition the part sequence has been optimized to improve  mRNA stability removing internal recognition sites for endonucleases
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===Source===
 
===Source===
  
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Coding sequence of this Acetoacetyl-CoA reductase has been found within the genome of Ralstoni eutropha.
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Coding sequence of this Acetoacetyl-CoA reductase has been found within the genome of <i>Ralstoni eutropha</i>.
 
Uniprot reference: https://www.uniprot.org/uniprot/P14697
 
Uniprot reference: https://www.uniprot.org/uniprot/P14697
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===References===
 
===References===
  
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https://pubmed.ncbi.nlm.nih.gov/23913421/
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"Directed Evolution and Structural Analysis of NADPH-Dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) Reductase from <i>Ralstoni eutropha</i> Reveals Two Mutations Responsible for Enhanced Kinetics | Applied and Environmental Microbiology", Applied and Environmental Microbiology, 2021. [Online]. Available: https://journals.asm.org/doi/10.1128/aem.01768-13?permanently=true.

Latest revision as of 13:26, 5 October 2021


CDS_PhaB^173S


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This part corresponds with the codon optimized coding sequence of PhaB^173S enzyme. Codon optimization has been performed using DeNovo DNA Software, adjusting the codon usage for high expression in Synechococcus elongatus PCC7942. In addition the part sequence has been optimized to improve mRNA stability removing internal recognition sites for endonucleases

Source

Coding sequence of this Acetoacetyl-CoA reductase has been found within the genome of Ralstoni eutropha. Uniprot reference: https://www.uniprot.org/uniprot/P14697

References

"Directed Evolution and Structural Analysis of NADPH-Dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) Reductase from Ralstoni eutropha Reveals Two Mutations Responsible for Enhanced Kinetics | Applied and Environmental Microbiology", Applied and Environmental Microbiology, 2021. [Online]. Available: https://journals.asm.org/doi/10.1128/aem.01768-13?permanently=true.