Difference between revisions of "Talk:Catalog"

(→‎Software tools)
 
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==Software tools==
 
==Software tools==
 +
Ordered from most important to least important.
 
#Tool for marking parts to be included or not included in the distribution
 
#Tool for marking parts to be included or not included in the distribution
 
#*This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
 
#*This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
 +
#Categories support, like drop down menus
 +
#Star system for the quality of a part
 
#An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages.
 
#An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages.
 
#Being able to enter parameter values into a new type of tables
 
#Being able to enter parameter values into a new type of tables
−
#Copy and rename functionality for column sets
+
#Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
 +
#Merge of main pages and design pages of parts
 +
#Being able to highlight and copy sequences from the sequence and features box
 
#Auto-translation to amino acid sequence for protein tags and modifiers
 
#Auto-translation to amino acid sequence for protein tags and modifiers
 +
#Auto-detection of -10 and -35 sites in promoters
 
#Auto-detection of direction of protein coding sequences based on sequence
 
#Auto-detection of direction of protein coding sequences based on sequence
 
#Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
 
#Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
−
#Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
+
#Copy and rename functionality for column sets
 
#A method for importing promoters (and other parts) from ecocyc (and other similar databases).
 
#A method for importing promoters (and other parts) from ecocyc (and other similar databases).
 
#Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters.
 
#Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters.
 
#Auto-detection of the swissprot and kegg database references for protein coding regions
 
#Auto-detection of the swissprot and kegg database references for protein coding regions
 
#[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for protein generators and terminators
 
#[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for protein generators and terminators
 +
#Auto-detection for shine-delgarno sequences in ribosome binding sites
 +
 +
===To be prioritized===
 +
*Software to support additional assembly standards
 +
 +
==Help videos==
 +
#Plasmid backbones
 +
#Assembly
 +
#*What is assembly and why do we talk about it?
 +
#*Assembly standard 10 and 3A assembly
 +
#*Other assembly standards
 +
#How to send the Registry parts
 +
#How to get parts from the Registry

Latest revision as of 18:09, 7 April 2009

Software tools

Ordered from most important to least important.

  1. Tool for marking parts to be included or not included in the distribution
    • This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
  2. Categories support, like drop down menus
  3. Star system for the quality of a part
  4. An RBS strength calculator should be available on RBS and coding sequence pages.
  5. Being able to enter parameter values into a new type of tables
  6. Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
  7. Merge of main pages and design pages of parts
  8. Being able to highlight and copy sequences from the sequence and features box
  9. Auto-translation to amino acid sequence for protein tags and modifiers
  10. Auto-detection of -10 and -35 sites in promoters
  11. Auto-detection of direction of protein coding sequences based on sequence
  12. Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
  13. Copy and rename functionality for column sets
  14. A method for importing promoters (and other parts) from ecocyc (and other similar databases).
  15. Sites for transcriptional regulators should be automatically identified for all promoters (and maybe other parts), add any identified sites as features to the promoters.
  16. Auto-detection of the swissprot and kegg database references for protein coding regions
  17. Secondary structure predictor that can show a graphic of the predicted secondary structure for protein generators and terminators
  18. Auto-detection for shine-delgarno sequences in ribosome binding sites

To be prioritized

  • Software to support additional assembly standards

Help videos

  1. Plasmid backbones
  2. Assembly
    • What is assembly and why do we talk about it?
    • Assembly standard 10 and 3A assembly
    • Other assembly standards
  3. How to send the Registry parts
  4. How to get parts from the Registry