Difference between revisions of "Part:BBa K3766022"

Latest revision as of 13:21, 20 October 2021

T7 CGG promoter (reverse orientation)

This part is the T7_CGG promoter (TAATACCGGTCACTATA) in reverse orientation. It is a variant of the strong promoter from T7 bacteriophage (taatacgactcactata) with GG at 3' end.

Usage and Biology

The T7_CGG promoter is recognized specifically by the orthogonal T7 CGG-R12-KIRV RNA polymerase (BBa_K3766000) [1].

The T7 RNA polymerase initiates the transcription at the first guanidine of this stretch of three G and it was shown that +1 GG is one of the best +1, +2 base combinations at the transcription initiation for enhanced promoter strength [2].

References

[1] Meyer AJ, Ellefson JW, Ellington AD. Directed evolution of a panel of orthogonal T7 RNA Polymerase variants for in vivo or in vitro synthetic circuitry. ACS synthetic biology (2015) 4: 1070–1076.

[2] Imburgio D, Rong M, Ma K, McAllister WT. Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants. Biochemistry (2000) 39, 10419-10430.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 10
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K3766022 short</partinfo>
-T7 CGG promoter (reverse orientation)
+This part is the T7<sub>CGG</sub> promoter (TAATACCGGTCACTATA) in reverse orientation. It is a variant of the strong promoter from T7 bacteriophage (taatacgactcactata) with GG at 3' end.
-<!-- Add more about the biology of this part here
 ===Usage and Biology===
+The T7<sub>CGG</sub> promoter is recognized specifically by the orthogonal T7 CGG-R12-KIRV RNA polymerase ([[Part:BBa_K3766000|BBa_K3766000]]) [1].
+The T7 RNA polymerase initiates the transcription at the first guanidine of this stretch of three G and it was shown that +1 GG is one of the best +1, +2 base combinations at the transcription initiation for enhanced promoter strength [2].
+===References===
+[1] Meyer AJ, Ellefson JW, Ellington AD. Directed evolution of a panel of orthogonal T7 RNA Polymerase variants for ''in vivo'' or ''in vitro'' synthetic circuitry. ACS synthetic biology (2015) 4: 1070–1076.
+[2] Imburgio D, Rong M, Ma K, McAllister WT. Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants. Biochemistry (2000) 39, 10419-10430.
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