Difference between revisions of "Part:BBa K3332023"
 
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<partinfo>BBa_K3332023 short</partinfo>
 
<partinfo>BBa_K3332023 short</partinfo>
  
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Subunit of phosphonate ABC transporter, phosphonate binding protein, from S.meliloti 1021.Use K823004 to construct a new part that can transport glyphosate to cytoplasm.
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Subunit of phosphonate ABC transporter, phosphonate binding protein, from ''S.meliloti'' 1021.Use <partinfo>BBa_K823004</partinfo> to construct a new part that can transport glyphosate to cytoplasm.
  
 
===Biology===
 
===Biology===
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Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. Sinorhizobium meliloti 1021 encode ABC transporter by phnEE, phnC, phnD gene, this transporter can transport glyphosate to cytoplasm. The phnC gene encodes ATP-binding protein and the phnD encodes phosphonate binding protein of the ABC transporter.
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. ''Sinorhizobium meliloti'' 1021 encode ABC transporter by ''phnEE'', ''phnC'', ''phnD'' gene, this transporter can transport glyphosate to cytoplasm. The ''phnC'' gene encodes ATP-binding protein and the ''phnD'' encodes phosphonate binding protein of the ABC transporter.
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===Usage===
 
===Usage===
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We ligased the strong promoter (BBa_J23100) and the parts (RBS-phnE1-RBS-phnE2-RBS-phnC-RBS-phnD-Terminator) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into E. coli DH5α & E. coli BL21(DE3), enabled the E. coli to transport glyphosate to cytoplasm at higher efficiency.
 
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===Characterization===
 
  
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<span class='h3bb'>Sequence and Features</span>
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;We ligased the coding part J23100-B0034-phnE1-B0034-phnE2 (<partinfo>BBa_K3332067</partinfo>) and the part B0034-phnC-B0034-phnD on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into ''E. coli'' DH5α & ''E. coli'' BL21(DE3), enabled the ''E. coli'' to transport glyphosate to cytoplasm at higher efficiency.
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===Sequence and Features===
 
<partinfo>BBa_K3332023 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3332023 SequenceAndFeatures</partinfo>
  

Latest revision as of 01:22, 28 October 2020


phnD

Subunit of phosphonate ABC transporter, phosphonate binding protein, from S.meliloti 1021.Use BBa_K823004 to construct a new part that can transport glyphosate to cytoplasm.

Biology

        phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. Sinorhizobium meliloti 1021 encode ABC transporter by phnEE, phnC, phnD gene, this transporter can transport glyphosate to cytoplasm. The phnC gene encodes ATP-binding protein and the phnD encodes phosphonate binding protein of the ABC transporter.

Usage

        We ligased the coding part J23100-B0034-phnE1-B0034-phnE2 (BBa_K3332067) and the part B0034-phnC-B0034-phnD on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into E. coli DH5α & E. coli BL21(DE3), enabled the E. coli to transport glyphosate to cytoplasm at higher efficiency.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 275
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 574
    Illegal AgeI site found at 832
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 177
    Illegal BsaI.rc site found at 511
    Illegal SapI site found at 13