Difference between revisions of "Part:BBa K3440003"

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<partinfo>BBa_K3440003 short</partinfo>
 
<partinfo>BBa_K3440003 short</partinfo>
  
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Plux (BBa_R0062)-RBS(BBa_B0034)-GFP(BBa_E0040)
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Plux (BBa_R0062) - RBS (BBa_B0034) - GFP(BBa_E0040)
  
 
===Usage and Biology===
 
===Usage and Biology===
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Produces GFP under Plux. Plux can be activated by LuxR:3OC6-HSL.
+
 
 +
This part can be used to produce GFP under Plux, which can be activated by the complex LuxR:3OC6-HSL. GFP is a fluorescent reporter gene originally found in Aequorea victoria (Jellyfish) [1]. It gives a green color (emission at 530nm) when excited at 483nm. pLux promoter is found in Vibrio Fischeri [2] and has a role in the quorum sensing system we use. In our project, we rely on this promoter to activate genes when LuxI is expressed upstream. LuxI expression release 3OC6-HSl, a signalling molecule that can be complexed with LuxR on the receiver end and subsequently activates pLux.
 +
 
 +
In our project, we use the BBa_K344003 part in order to test the leakiness of pLux promoter.
  
 
===Characterization===
 
===Characterization===
 +
 
Due to the pandemics, we haven’t been able to use biobricks to create the iGEM Stockholm 2020 parts. Those parts were ordered as gene blocks from Integrated DNA Technologies Inc.. As a result, the sequences of the biobricks used are the same, but the scars between biobricks might differ, as well as the final size of the part.
 
Due to the pandemics, we haven’t been able to use biobricks to create the iGEM Stockholm 2020 parts. Those parts were ordered as gene blocks from Integrated DNA Technologies Inc.. As a result, the sequences of the biobricks used are the same, but the scars between biobricks might differ, as well as the final size of the part.
  
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[[File:BBa_K34440001 and BBa_K3440002_WB.png|thumb|center|500px|Colony PCR Gel for BBa_K34440001 (C) and BBa_K3440003 (D)]][[File:leakinessfluo.png|thumb|center|1000px|Fluorescence measurements for BBa_K34440003 (D)]]
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After heat shock transformation of the pSB1C3 plasmid containing the BBa_K3440003, we picked colonies from plates (Figure 1) and PCR amplified them with primers VF and VR2. We ran gels of the product at 180V and for 30 mins (Figure 2). We obtained the expected size for the bands (1113bp) for D1.
 +
 
 +
We therefore prepared plasmid preparations and glycerol stocks of D1 and sent it for sequencing to Microsynth AG. The sequence obtained corresponded to the expected part for D1.
 +
<div><ul>
 +
<li style="display: inline-block;vertical-align: top;">[[File: T--Stockholm--PlateD.png|thumb|left|300px|Figure 1: Transformation plate of BBa_K3440003 (noted D)]]</li>
 +
<li style="display: inline-block;vertical-align: top;"> [[File:T--Stockholm--BBa_K34440001_and_BBa_K3440002_WB.png|thumb|center|500px|Figure 2: Colony PCR Gel for BBa_K34440001 (C) and BBa_K3440003 (D)]] </li>
 +
</ul></div>
 +
 
 +
We then proceeded to test the leakiness of pLux promoter thanks to the GFP reporter added in the part. We measured fluorescence intensity (excitation 483nm, emission 530nm) of GFP for D1 and calibrated the values with OD600 measurements. The obtained results (Figure 3) show as expected a low expression of GFP under uninduced pLux (<1000AU).
 +
 
 +
[[File:T--Stockholm--Leakinessfluo.png|thumb|center|1000px|Figure 3: Fluorescence measurements for BBa_K34440003 (D1)]]
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K3440003 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3440003 SequenceAndFeatures</partinfo>
  
 +
===References===
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[1] Uniprot entry P42212
 +
[2] UniProtKB - P12746
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  

Latest revision as of 22:57, 27 October 2020


GFP under Plux

Plux (BBa_R0062) - RBS (BBa_B0034) - GFP(BBa_E0040)

Usage and Biology

This part can be used to produce GFP under Plux, which can be activated by the complex LuxR:3OC6-HSL. GFP is a fluorescent reporter gene originally found in Aequorea victoria (Jellyfish) [1]. It gives a green color (emission at 530nm) when excited at 483nm. pLux promoter is found in Vibrio Fischeri [2] and has a role in the quorum sensing system we use. In our project, we rely on this promoter to activate genes when LuxI is expressed upstream. LuxI expression release 3OC6-HSl, a signalling molecule that can be complexed with LuxR on the receiver end and subsequently activates pLux.

In our project, we use the BBa_K344003 part in order to test the leakiness of pLux promoter.

Characterization

Due to the pandemics, we haven’t been able to use biobricks to create the iGEM Stockholm 2020 parts. Those parts were ordered as gene blocks from Integrated DNA Technologies Inc.. As a result, the sequences of the biobricks used are the same, but the scars between biobricks might differ, as well as the final size of the part.

After heat shock transformation of the pSB1C3 plasmid containing the BBa_K3440003, we picked colonies from plates (Figure 1) and PCR amplified them with primers VF and VR2. We ran gels of the product at 180V and for 30 mins (Figure 2). We obtained the expected size for the bands (1113bp) for D1.

We therefore prepared plasmid preparations and glycerol stocks of D1 and sent it for sequencing to Microsynth AG. The sequence obtained corresponded to the expected part for D1.

  • Figure 1: Transformation plate of BBa_K3440003 (noted D)
  • Figure 2: Colony PCR Gel for BBa_K34440001 (C) and BBa_K3440003 (D)

We then proceeded to test the leakiness of pLux promoter thanks to the GFP reporter added in the part. We measured fluorescence intensity (excitation 483nm, emission 530nm) of GFP for D1 and calibrated the values with OD600 measurements. The obtained results (Figure 3) show as expected a low expression of GFP under uninduced pLux (<1000AU).

Figure 3: Fluorescence measurements for BBa_K34440003 (D1)

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 725

References

[1] Uniprot entry P42212 [2] UniProtKB - P12746