Difference between revisions of "Part:BBa K3638004"
| (2 intermediate revisions by the same user not shown) | |||
| Line 17: | Line 17: | ||
<partinfo>BBa_K3638004 parameters</partinfo> | <partinfo>BBa_K3638004 parameters</partinfo> | ||
<!-- --> | <!-- --> | ||
| + | ==The effect of pEGFP-miR-155-sponge-1 as a monitor to detect the expression of miR-155== | ||
| + | In order to explore whether the expression of miR-155 correlates with the GFP value of pEGFP-miR-155-sponge-1 in breast cancer cells, breast cancer cells were cotransfected with pEGFP-miR-155-sponge-1 and pre-miR-155 (overexpression of mature miR-155). After transfection, cells were examined under fluorescence microscopy (Fig. 6 A, B, C, D). The fluorescence of GFP was decreased in MDA-MB 231 cells and MDA-MB 468 cells transfected with pre-miR-155, compared with that of controls (Fig. 6). In addition, we also measured the value of GFP fluorescence by plate reader (SpectraMax i3). The down-regulation of GFP fluorescence was observed in breast cancer cells transfected with pre-miR-155, compared with controls (Fig. 7). Taken together, these results reveal pEGFP-miR-155-sponge-1 could act as a monitor to detect the expression of miR-155. | ||
| + | <br/>[[File:T--worldshaper-Wuhan-part1.png|500px|thumb|center|Fig 6. The images of different breast cells transfected with different plasmids.]] | ||
| + | (A). pEGFP-miR-155-sponge-1 was transfected in MDA-MB 468 cells. (B). pEGFP-miR-155-sponge-1 and pre-miR-155 were cotransfected in MDA-MB 468 cells. (C). pEGFP-miR-155-sponge-1 was transfected in MDA-MB 231 cells (D). pEGFP-miR-155-sponge-1 and pre-miR-155 were cotransfected in MDA-MB 231cells. | ||
| + | <br/>[[File:T--worldshaper-Wuhan-part2.png|400px|center]] | ||
| + | [[File:T--worldshaper-Wuhan-part3.png|400px|center]] | ||
| + | <br/>To further test the effect of pEGFP-miR-155-sponge-1 as a monitor to detect the expression of miR-155, cells were transfected with pEGFP-miR-155-sponge-1 with different concentration of pre-miR-155. We used the plasmid of pre-miR-155 to quantify miR-155 expression and calculate the copy numbers of miR-155 by using the formula listed below. The down-regulation of GFP fluorescence was observed in breast cancer cells transfected with different concentration of pre-miR-155 compared with normal cells (Fig. 7). Taken together, these results reveal a combination of pEGFP-miR-155 sensor and XIST. | ||
| + | copies/ul= (6.02×1023)×(plasmids concentrations ng/ul×10-9)/(DNA length×660) | ||
| + | <br/>[[File:T--worldshaper-Wuhan-part4.png|500px|center]] | ||
| + | <br/>The standard curve of pEGFP-miR-155-sponge-1 was made by EXCEL (Fig8). We find that the value of fluorescence is dependent on the copy numbers of miR-155 in cells. Based on the formula, the correlation coefficient (R2 value) of pEGFP-miR-155-sponge-1 in MDA-MB 468 cells was 0.9988. | ||
| + | [[File:T--worldshaper-Wuhan-part5.png|400px|thumb|center|Fig 8. The standard curve of pEGFP-miR-155-sponge-1 in MDA-MB 468 cells]] | ||
Latest revision as of 04:10, 4 October 2020
phage-pre-miR-155
Phage-pre-miR-155 was applied to overexpress miR-155 in cells.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
The effect of pEGFP-miR-155-sponge-1 as a monitor to detect the expression of miR-155
In order to explore whether the expression of miR-155 correlates with the GFP value of pEGFP-miR-155-sponge-1 in breast cancer cells, breast cancer cells were cotransfected with pEGFP-miR-155-sponge-1 and pre-miR-155 (overexpression of mature miR-155). After transfection, cells were examined under fluorescence microscopy (Fig. 6 A, B, C, D). The fluorescence of GFP was decreased in MDA-MB 231 cells and MDA-MB 468 cells transfected with pre-miR-155, compared with that of controls (Fig. 6). In addition, we also measured the value of GFP fluorescence by plate reader (SpectraMax i3). The down-regulation of GFP fluorescence was observed in breast cancer cells transfected with pre-miR-155, compared with controls (Fig. 7). Taken together, these results reveal pEGFP-miR-155-sponge-1 could act as a monitor to detect the expression of miR-155.
(A). pEGFP-miR-155-sponge-1 was transfected in MDA-MB 468 cells. (B). pEGFP-miR-155-sponge-1 and pre-miR-155 were cotransfected in MDA-MB 468 cells. (C). pEGFP-miR-155-sponge-1 was transfected in MDA-MB 231 cells (D). pEGFP-miR-155-sponge-1 and pre-miR-155 were cotransfected in MDA-MB 231cells.
To further test the effect of pEGFP-miR-155-sponge-1 as a monitor to detect the expression of miR-155, cells were transfected with pEGFP-miR-155-sponge-1 with different concentration of pre-miR-155. We used the plasmid of pre-miR-155 to quantify miR-155 expression and calculate the copy numbers of miR-155 by using the formula listed below. The down-regulation of GFP fluorescence was observed in breast cancer cells transfected with different concentration of pre-miR-155 compared with normal cells (Fig. 7). Taken together, these results reveal a combination of pEGFP-miR-155 sensor and XIST.
copies/ul= (6.02×1023)×(plasmids concentrations ng/ul×10-9)/(DNA length×660)
The standard curve of pEGFP-miR-155-sponge-1 was made by EXCEL (Fig8). We find that the value of fluorescence is dependent on the copy numbers of miR-155 in cells. Based on the formula, the correlation coefficient (R2 value) of pEGFP-miR-155-sponge-1 in MDA-MB 468 cells was 0.9988.
