Difference between revisions of "Part:BBa K3002007"
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<img src="https://2019.igem.org/wiki/images/b/b8/T--TU_Kaiserslautern--resultsFigure5.svg"/> | <img src="https://2019.igem.org/wiki/images/b/b8/T--TU_Kaiserslautern--resultsFigure5.svg"/> | ||
<p class="caption"><span class="phat">MUT-PETase destined for secretion gets stuck inside the cell. | <p class="caption"><span class="phat">MUT-PETase destined for secretion gets stuck inside the cell. | ||
− | </span><span class="accent">(a)</span> Level 2 MoClo construct harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase genes. MUT-PETase and MHETase are equipped with the secretion signal from carbonic anhydrase (cCA). See Figure 1 for the description of other parts. <span class="accent">(b)</span> Seven days old cultures of transformants generated with the construct shown in <span class="accent">(a)</span> were centrifuged and proteins in the culture medium were precipitated by TCA and analysed by immunoblotting using an anti-HA antibody. The black arrow represents MHETase. <span class="accent">(c)</span> Whole-cell proteins of UVM4 cells transformed with construct L2C shown in <span class="accent">(a)</span> were analyzed by immuno-blotting using an anti-HA antibody. Transformant A27 generated with construct L2A (Figure 4a) and UVM4 were used as positive and negative controls, respectively. The white arrow indicates MUT-PETase. <span class="accent">(d)</span> Immunfluorescence analysis of transformants 17 and 27 using an anti-HA antibody. DAPI staining was also performed. UVM4 cells served as control. | + | </span><span class="accent">(a)</span> Level 2 MoClo construct harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase genes. MUT-PETase and MHETase are equipped with the secretion signal from carbonic anhydrase (cCA). See Figure 1 for the description of other parts. <span class="accent">(b)</span> Seven days old cultures of transformants generated with the construct shown in <span class="accent">(a)</span> were centrifuged and proteins in the culture medium were precipitated by TCA and analysed by immunoblotting using an anti-HA antibody. The black arrow represents MHETase. <span class="accent">(c)</span> Whole-cell proteins of UVM4 cells transformed with construct L2C (<a href="https://parts.igem.org/Part:BBa_K3002202">BBa_K3002202</a>) shown in <span class="accent">(a)</span> were analyzed by immuno-blotting using an anti-HA antibody. Transformant A27 generated with construct L2A (<a href="https://parts.igem.org/Part:BBa_K3002200">BBa_K3002200</a>) (Figure 4a) and UVM4 were used as positive and negative controls, respectively. The white arrow indicates MUT-PETase. <span class="accent">(d)</span> Immunfluorescence analysis of transformants 17 and 27 using an anti-HA antibody. DAPI staining was also performed. UVM4 cells served as control. |
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<img src="https://2019.igem.org/wiki/images/0/0a/T--TU_Kaiserslautern--resultsFigure8.svg"/> | <img src="https://2019.igem.org/wiki/images/0/0a/T--TU_Kaiserslautern--resultsFigure8.svg"/> | ||
<p class="caption"><span class="phat">The SP20 module increases the efficiency of protein secretion. | <p class="caption"><span class="phat">The SP20 module increases the efficiency of protein secretion. | ||
− | </span><span class="accent">(a)</span> Level 2 MoClo constructs harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase equipped with the secretion signals introduced in Figure 6. The constructs contain the coding sequence for a conventional 3xHA tag (C, K, L), or the 3xHA tag preceded by a SP20 tag to enhance glycosylation (M, N, O). See Figure 1 for the description of other parts. <span class="accent">(b)</span> UVM4 transformants containing the constructs C, K, L and M, N, O were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformant A27 introduced in Figures 4, served as positive control. The black arrow points to MHETase, the white arrow to MUT-PETase and the grey arrow to RPL1 (chloroplast ribosomal 50S protein L1). The RPL1 antibody was used to detect contamination from intracellular proteins. | + | </span><span class="accent">(a)</span> Level 2 MoClo constructs harboring the aadA selection marker, and the coding sequences for MUT-PETase and MHETase equipped with the secretion signals introduced in Figure 6. The constructs contain the coding sequence for a conventional 3xHA tag (C, K, L)(<a href="https://parts.igem.org/Part:BBa_K3002202">BBa_K3002202</a>, <a href="https://parts.igem.org/Part:BBa_K3002210">BBa_K3002210</a>, <a href="https://parts.igem.org/Part:BBa_K3002211">BBa_K3002211</a>), or the 3xHA tag preceded by a SP20 tag to enhance glycosylation (M, N, O). See Figure 1 for the description of other parts. <span class="accent">(b)</span> UVM4 transformants containing the constructs C, K, L and M, N, O (<a href="https://parts.igem.org/Part:BBa_K3002202">BBa_K3002202</a>, <a href="https://parts.igem.org/Part:BBa_K3002210">BBa_K3002210</a>, <a href="https://parts.igem.org/Part:BBa_K3002211">BBa_K3002211</a>, <a href="https://parts.igem.org/Part:BBa_K3002212">BBa_K3002212</a>, <a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>, <a href="https://parts.igem.org/Part:BBa_K3002214">BBa_K3002214</a>) were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Transformant A27 introduced in Figures 4, served as positive control. The black arrow points to MHETase, the white arrow to MUT-PETase and the grey arrow to RPL1 (chloroplast ribosomal 50S protein L1). The RPL1 antibody was used to detect contamination from intracellular proteins. |
</p> | </p> | ||
− | </div> | + | </div> |
+ | |||
<div class="figure"> | <div class="figure"> | ||
<img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | <img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | ||
<p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | <p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | ||
− | </span><span class="accent">(a)</span> Transformants generated with construct L2N <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. | + | </span><span class="accent">(a)</span> Transformants generated with construct L2N (<a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>) <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. |
</p> | </p> | ||
</div><p> | </div><p> | ||
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</p> | </p> | ||
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+ | <h1> The Kaiser Collection </h1> | ||
+ | <p> | ||
+ | We are proud to present our very own MoClo part collection for C. reinhardtii - the <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Part_Collection">Kaiser collection</a>. | ||
+ | </p> | ||
+ | <p> | ||
+ | These 20 Parts are specifically designed and codon optimized for Chlamydomonas. Among them are regulatory elements, antibiotic resistances, resistance cassettes, secretion signals and tags. These parts were tested and optimized thoroughly and we can guarantee that they work 100%. With these, expression and secretion in Chlamy will be a success. Because this is a MoClo collection, the parts are highly standardized for worldwide application. The combination with other part collections works fast and easy. While in MoClo, nomenclature is a bit different from the iGEM BioBricks, it is quickly explained: | ||
+ | </p> | ||
+ | <p> | ||
+ | Level 0 parts are equivalent to basic parts, e.g. Promoters, coding sequences, etc. | ||
+ | </p> | ||
+ | <p> | ||
+ | Level 1 parts are combinations of basic parts and usually form functional transcription units. | ||
+ | </p> | ||
+ | <p> | ||
+ | Level 2 parts are combinations of Level 1 parts, in case you want to transfer multiple transcription units at once. For example, you can pair your gene of interest with a selection marker. | ||
+ | </p> | ||
+ | <p> | ||
+ | The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. | ||
+ | After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. | ||
+ | For this reason, we believe that our Kaiser Collection will strike a significant chord, as the future lies in standardized, easy to use methods such as MoClo. | ||
+ | Visit our <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Part_Collection">part collection site</a> to get an overview over all parts of the Kaiser Collection | ||
+ | </p> | ||
+ | </html> | ||
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Latest revision as of 22:46, 13 December 2019
cCA secretion signal for Chlamydomonas reinhardtii (Phytobrick)
This basic part contains the secretion signal of the carbonic anhydrase (cCA) (B2) for Chlamydomonas reinhardtii and was built as a part of the Kaiser Collection. By using this part in your construct in combination with an appropriate promoter of the Kaiser Collection like BBa_K3002031 (PAR-promoter (A1-B1)) or BBa_K3002001 (PSAD-promoter (A1-B1)), your target protein will be translocated into the surrounding medium.