Difference between revisions of "Part:BBa K3002111"
(2 intermediate revisions by one other user not shown) | |||
Line 28: | Line 28: | ||
<img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | <img src="https://2019.igem.org/wiki/images/5/58/T--TU_Kaiserslautern--resultsFigure9.svg"/> | ||
<p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | <p class="caption"><span class="phat">Identification of MHETase and MUT-PETase by LC-MS/MS. | ||
− | </span><span class="accent">(a)</span> Transformants generated with construct L2N <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. | + | </span><span class="accent">(a)</span> Transformants generated with construct L2N |
+ | (<a href="https://parts.igem.org/Part:BBa_K3002213">BBa_K3002213</a>) | ||
+ | <span class="accent">(d)</span> were grown in TAP medium for seven days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. Protein bands corresponding to those detected with the anti-HA antibody in a gel run in parallel and stained with Coomassie brilliant blue were excised, in-gel digested with trypsin and analyzed by LC-MS/MS. Peptides identified by LC-MS/MS for MHETase (green) and MUT-PETase (purple) are indicated. <span class="accent">(b, c)</span> Sequences of MHETase and MUT-PETase with the peptides detected by LC-MS/MS are highlighted in green and purple, respectively. | ||
</p> | </p> | ||
</div><p></p> | </div><p></p> | ||
Line 49: | Line 51: | ||
</p> | </p> | ||
</div> | </div> | ||
− | + | </html> | |
<html> | <html> | ||
<h1> The Chlamy Yummy Project Collection </h1> | <h1> The Chlamy Yummy Project Collection </h1> | ||
<p> | <p> | ||
− | We are proud to present our MoClo part collection for C. reinhardtii - the <a href="https://2019.igem.org/Team:TU_Kaiserslautern/ | + | We are proud to present our MoClo part collection for C. reinhardtii - the <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Parts"> Chlamy Yummy project collection</a>. |
</p> | </p> | ||
<p> | <p> | ||
Line 70: | Line 72: | ||
The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. | The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. | ||
After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. | After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. | ||
− | Visit our <a href="https://2019.igem.org/Team:TU_Kaiserslautern/ | + | Visit our <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Parts">parts site</a> to get an overview over all parts. |
</p> | </p> | ||
</html> | </html> | ||
+ | |||
Latest revision as of 00:24, 14 December 2019
Level 1 Mutant PETase + ARS + sp20-HA
This composite part contains the PAR-promoter (BBa_K3002027) in combination with the RPL23-Terminator (BBa_K3002006), the SP20-HA-tag (BBa_K3002010), the secretion signal ARS (BBa_K3002009) and the coding sequence of the Mutant PETase (BBa_K3002014) plus the MoClo connectors for positions B1-B2 (BBa_K3002302), B2-B3 (BBa_K3002303), B4-B5 (BBa_K3002304) and B5-B6 (BBa_K3002305).
The Mut-PETase in combination with the secretion signal ARS and the SP20-tag showed secretion by C.reinhardtii. In constructs without the SP20-tag no secretion of the MUT-PETase was detectable. This applies for the MUT-PETase in combination with the MHETase. Constructs containing ARS and SP20-tag lead to a high yield of the secreted proteins.
The Chlamy Yummy Project Collection
We are proud to present our MoClo part collection for C. reinhardtii - the Chlamy Yummy project collection.
These 67 parts are all parts used during our project and were specifically designed and codon optimized for Chlamydomonas. Among them are basic parts (L0) of a novel mutant of the PETase (BBa_K3002014), the wildtype PETase and MHETase as well as a variety of functional composite parts (L1+2). Containing different tags as well as selection markers, this collection serves as a perfect base for plastic degradation projects with Chlamydomonas. These parts were tested and optimized thoroughly and we can guarantee that they work 100%. Because this is a MoClo collection, the parts are highly standardized for worldwide application. The combination with other part collections works fast and easy. While in MoClo, nomenclature is a bit different from the iGEM BioBricks, it is quickly explained:
Level 0 parts are equivalent to basic parts, e.g. Promoters, coding sequences, etc.
Level 1 parts are combinations of basic parts and usually form functional transcription units.
Level 2 parts are combinations of Level 1 parts, in case you want to transfer multiple transcription units at once. For example, you can pair your gene of interest with a selection marker.
The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. Visit our parts site to get an overview over all parts.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 1075
Illegal PstI site found at 2048 - 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 249
Illegal PstI site found at 1075
Illegal PstI site found at 2048 - 21COMPATIBLE WITH RFC[21]
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 1075
Illegal PstI site found at 2048 - 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 1075
Illegal PstI site found at 2048
Illegal NgoMIV site found at 810
Illegal NgoMIV site found at 837
Illegal NgoMIV site found at 2608 - 1000COMPATIBLE WITH RFC[1000]