Difference between revisions of "Part:BBa K2983061"

Latest revision as of 18:52, 21 October 2019

FadX of Punica granatum

This part is an Yarrowia lipolytica codon optimized version of the bifunctional fatty acid conjugase / desaturase (FadX) from Punica granatum (Uniprot Q84UB8).

Usage and Biology

The bifunctional fatty acid conjugase / desaturase FadX (EC: 1.14.19.16) catalyses the conversion of linoleic acid, C18:2 (9Z,12Z) into punicic acid, C18:3 (9Z, 11E, 13Z) (Figure 1).

Figure 1. Conversion of linoleic acid to punicic acid (both incorporated into phosphatidylcholine) by EC: 1.14.19.16.

The Punica granatum (pomegranate) FadX (Pg-FadX) [1] is a 45.828 kDa protein of 395 amino acids. It's activity leads to the accumulation of important quantities of punicic acid in the pomegranate seeds.

When placed them under the control of a constitutive promoter and expressed in the genome of the oleaginous yeast Yarrowia lipolytica, this part leads to the production of punicic acid, a non natural metabolite of Y. lipolytica. For further details, see the Main Page on the Registry of the Pg-FadX expression plasmid (BBa_K2983181) that is able to integrate, upon transformation, into the genome of a Y. lipolytica Po1d stain.

References

[1] Hornung E, Pernstich C, Feussner I. Formation of conjugated Delta11Delta13-double bonds by Delta12-linoleic acid (1,4)-acyl-lipid-desaturase in pomegranate seeds. Eur J Biochem (2002) 269, 4852-4859.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K2983061 short</partinfo>
-PgFadX
+This part is an ''Yarrowia lipolytica'' codon optimized version of the bifunctional fatty acid conjugase / desaturase (FadX) from ''Punica granatum'' (Uniprot Q84UB8).
-Conjugated linolenic acids (CLnAs) are synthetized by bifunctional fatty acid conjugase / desaturase (FadX) enzymes from linoleic acid, C18:2 (9Z,12Z).Thus, to convert it into punicic acid, only the presence of a EC: 1.14.19.16 enzyme is necessary (Figure 1).
+===Usage and Biology===
-Two EC: 1.14.19.16 enzymes were described in the literature: one from pomegranate / Punica granatum (Pg-FadX, BBa_K2983061) and another one from the chinese cucumber / chinese snake gourd / Trichosanthes kirilowii (Tk-FadX, BBa_K2983062).
-[[File:T--Evry Paris-Saclay--PuA reaction.png|900px|thumb|left| Figure 1:Conversion of linoleic acid to punicic acid  (both incorporated into phosphatidylcholine)]]
+The bifunctional fatty acid conjugase / desaturase FadX (EC: 1.14.19.16) catalyses the conversion of linoleic acid, C18:2 (9Z,12Z) into punicic acid, C18:3 (9Z, 11E, 13Z) (Figure 1).
-<!-- Add more about the biology of this part here
+[[File:T--Evry Paris-Saclay--PuA reaction.png|900px|thumb|left| Figure 1. Conversion of linoleic acid to punicic acid  (both incorporated into phosphatidylcholine) by EC: 1.14.19.16.]]
-===Usage and Biology===
+The ''Punica granatum'' (pomegranate) FadX (Pg-FadX) [1] is a 45.828 kDa protein of 395 amino acids. It's activity leads to the accumulation of important quantities of punicic acid in the pomegranate seeds.
+When placed them under the control of a constitutive promoter and expressed in the genome of the oleaginous yeast ''Yarrowia lipolytica'', this part leads to the production of punicic acid, a non natural metabolite of ''Y. lipolytica''. For further details, see the Main Page on the Registry of the Pg-FadX expression plasmid ([[Part:BBa_K2983181|BBa_K2983181]]) that is able to integrate, upon transformation, into the genome of a ''Y. lipolytica'' Po1d stain.
+===References===
+[1] Hornung E, Pernstich C, Feussner I. Formation of conjugated Delta11Delta13-double bonds by Delta12-linoleic acid (1,4)-acyl-lipid-desaturase in pomegranate seeds. Eur J Biochem (2002) 269, 4852-4859.