Difference between revisions of "Part:BBa K3089036"

 
 
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<partinfo>BBa_K3089036 short</partinfo>
 
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T7 promoter+mfp5-linker-sfGFP, sfGFP as marker for protein expression
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<!-- Add more about the biology of this part here
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This composite part is meant to express mfp5-linker-sfGFP fusion genes under T7 promoter. Mfp5 is mussel foot proteins from Mytilus galloprovincialis responsible for interface adhesion. We have added sfGFP to characterize the expression of the recombinant protein. It is a robustly folded version of GFP, called ‘superfolder’ GFP, that folds well even when fused to poorly folded polypeptides(Waldo et al, 2006).
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===Usage and Biology===
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<span class='h3bb'>Sequence and Features</span>
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<span class='h3bb'><h3>Sequence and Features</h3></span>
 
<partinfo>BBa_K3089036 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3089036 SequenceAndFeatures</partinfo>
  
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<partinfo>BBa_K3089036 parameters</partinfo>
 
<partinfo>BBa_K3089036 parameters</partinfo>
 
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<h3>Characterization</h3>
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<Figure>
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<center>
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<img width="600px" src="https://2019.igem.org/wiki/images/c/c6/T--Greatbay_SCIE--P--036-Figure_1.png">
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</center>
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</figure>
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<center><figcaption> Figure 1. The circuit of the protein BBa_K30889036 </figcaption></center>
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<h3>Fluorescence analysis</h3>
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<p>
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T7 promoter+Mfp5-linker-sfGFP was cloned into pET28b and transformed into E.coli BL21 (DE3).We grew 25-ml cultures of E. coli BL21(DE3) bearing Mfp5-linker-sfGFP in LB medium containing kanamycin (50 mg/ml) overnight. We grew 1000-fold dilutions in 200-μL cultures to ~0.2/0.5/0.8 OD600 nm in a 96-well plate with cover and induced them at 37℃ with 500μM IPTG for 22 h. OD600nm and fluorescence was measured (488-nm excitation, 530-nm emission,10-nm band pass for GFP) with a Microplate Fluorescence Reader (THERMO Varioskan Flash). Fluorescence was normalized by dividing by the OD600 nm. We continuously monitored the OD600nm and fluorescence of these four strains and plotted the graph for their growth and induced fluorescence. We added IPTG to these strains in different times of their log phase, such as OD600nm=0.2(early), 0.5(medium), 0.8(late). Results was measured by ratio of fluorescence to OD600nm. Mfp5-sfGFP had a relatively poorer expression compare with sfGFP which was used as control (Figure 1ABC).
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</p>
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<figure>
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<center>
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<img width="600px" src="https://2019.igem.org/wiki/images/8/8f/T--Greatbay_SCIE--Fluorescence_analysis.png">
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</center>
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</figure>
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<center><figcaption> Figure 1. Normalized fluorescence by dividing with OD600nm of sfGFP fused constructs(A-C), OD600m(D-F) and fluorescence(G-I). Arrows indicate timing to add IPTG. Six repeats were monitored for each groups and anomalies below 0 was ignored.</figcaption>
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</center>
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<figure>
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<center>
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<img width="450px" src="https://2019.igem.org/wiki/images/4/4e/T--Greatbay_SCIE--Normalized_fluorescence_measurement_of_CsgA-linker-Mfp5-linker-sfGFP.png">
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</figure>
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<figcaption> Figure.2 Normalized fluorescence (Fluorescence/OD600nm) measurement of Mfp5-linker-sfGFP. 500uM IPTG were added into cultures when it reached OD600nm at 0.2, 0.5, 0.8 separately after a 1000-fold dilution from overnight cultures. Arrows indicate timing to add IPTG. A.U. (arbitrary units) calculated by dividing fluorescence with OD600nm value. Six repeats were monitored for each groups and anomalies below 0 was ignored. </figcaption></center>
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<figure>
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<center>
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<img width="450px" src="https://2019.igem.org/wiki/images/f/f8/T--Greatbay_SCIE--Fluorescence_curve_of_CsgA-linker-Mfp5-linker-sfGFP.png">
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</center>
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</figure>
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<center><figcaption> Figure.3 Fluorescence curve of mfp5-linker-sfGFP </figcaption></center>
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<p>
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Interestingly,
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<b>adding inducer in early stage of log phase (OD=0.2) would delay the growth of CsgA-linker-Mfp5-linker-sfGFP (Figure 1D), letting them enter to lag phase again.</b>
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During this second-lag-phase, the fluorescence was growing continuously (Figure 2G), which means proteins was still accumulating in cells. However, when growth entered log phase again, the normalised fluorescence reduced to some extent due to the rapid increase of OD600nm value.
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<b> These phenomena are generally not observed when adding IPTG in medium (OD=0.5) and late log phase(OD=0.8)( Figure 1EF). </b>
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For what we concern is the total yield, in other words, the absolute fluorescence of the culture. Results showed adding IPTG in early log phase significantly reduced overall expression and the fluorescence reached its peak in 5 hours (Figure 3).
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</p>
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<p>
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<b>We concluded that we should add inducer in late log phase for higher-level expression and 5 hours’ induction was enough to get a highest yield.</b>
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</p>
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<h3>Reference</h3>
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<p>
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Waldo, G.S. et al. (January 2006). Engineering and characterization of a superfolder green fluorescent protein. Retrieved from http://www.nature.com/naturebiotechnology
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</p>

Latest revision as of 15:59, 21 October 2019


T7 promoter+mfp5-linker-sfGFP

This composite part is meant to express mfp5-linker-sfGFP fusion genes under T7 promoter. Mfp5 is mussel foot proteins from Mytilus galloprovincialis responsible for interface adhesion. We have added sfGFP to characterize the expression of the recombinant protein. It is a robustly folded version of GFP, called ‘superfolder’ GFP, that folds well even when fused to poorly folded polypeptides(Waldo et al, 2006).

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal XbaI site found at 47
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 159
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal XbaI site found at 47
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal XbaI site found at 47
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 354



Characterization

Figure 1. The circuit of the protein BBa_K30889036

Fluorescence analysis

T7 promoter+Mfp5-linker-sfGFP was cloned into pET28b and transformed into E.coli BL21 (DE3).We grew 25-ml cultures of E. coli BL21(DE3) bearing Mfp5-linker-sfGFP in LB medium containing kanamycin (50 mg/ml) overnight. We grew 1000-fold dilutions in 200-μL cultures to ~0.2/0.5/0.8 OD600 nm in a 96-well plate with cover and induced them at 37℃ with 500μM IPTG for 22 h. OD600nm and fluorescence was measured (488-nm excitation, 530-nm emission,10-nm band pass for GFP) with a Microplate Fluorescence Reader (THERMO Varioskan Flash). Fluorescence was normalized by dividing by the OD600 nm. We continuously monitored the OD600nm and fluorescence of these four strains and plotted the graph for their growth and induced fluorescence. We added IPTG to these strains in different times of their log phase, such as OD600nm=0.2(early), 0.5(medium), 0.8(late). Results was measured by ratio of fluorescence to OD600nm. Mfp5-sfGFP had a relatively poorer expression compare with sfGFP which was used as control (Figure 1ABC).

Figure 1. Normalized fluorescence by dividing with OD600nm of sfGFP fused constructs(A-C), OD600m(D-F) and fluorescence(G-I). Arrows indicate timing to add IPTG. Six repeats were monitored for each groups and anomalies below 0 was ignored.
Figure.2 Normalized fluorescence (Fluorescence/OD600nm) measurement of Mfp5-linker-sfGFP. 500uM IPTG were added into cultures when it reached OD600nm at 0.2, 0.5, 0.8 separately after a 1000-fold dilution from overnight cultures. Arrows indicate timing to add IPTG. A.U. (arbitrary units) calculated by dividing fluorescence with OD600nm value. Six repeats were monitored for each groups and anomalies below 0 was ignored.
Figure.3 Fluorescence curve of mfp5-linker-sfGFP

Interestingly, adding inducer in early stage of log phase (OD=0.2) would delay the growth of CsgA-linker-Mfp5-linker-sfGFP (Figure 1D), letting them enter to lag phase again. During this second-lag-phase, the fluorescence was growing continuously (Figure 2G), which means proteins was still accumulating in cells. However, when growth entered log phase again, the normalised fluorescence reduced to some extent due to the rapid increase of OD600nm value. These phenomena are generally not observed when adding IPTG in medium (OD=0.5) and late log phase(OD=0.8)( Figure 1EF). For what we concern is the total yield, in other words, the absolute fluorescence of the culture. Results showed adding IPTG in early log phase significantly reduced overall expression and the fluorescence reached its peak in 5 hours (Figure 3).

We concluded that we should add inducer in late log phase for higher-level expression and 5 hours’ induction was enough to get a highest yield.

Reference

Waldo, G.S. et al. (January 2006). Engineering and characterization of a superfolder green fluorescent protein. Retrieved from http://www.nature.com/naturebiotechnology