Difference between revisions of "Part:BBa K2912015"
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<partinfo>BBa_K2912015 short</partinfo>
 
<partinfo>BBa_K2912015 short</partinfo>
  
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This part is the coding sequence (CDS) of a cytoplasmic protein TupA (GenBank: BAB07375.1), which catalyzes the conversion of glucuronic acid and L-glutamic acid to polyglucuronic acid and poly-γ-L-glutamic acid.
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Trp_Lysis gene expression can be controlled by the concentration of Tryptophan
  
 
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<partinfo>BBa_K2912015 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2912015 SequenceAndFeatures</partinfo>
  
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===SZU-China 2019 iGEM team===
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The lysis gene from colicin-producing strains of bacteria encodes the lysis protein which is only 4872Da in molecular weight and performs two functions that are instrumental to the activity of Colicin E7 (ColE7):one of its function is to Release of ColE7 from ColE7—Immunity complex and the other is Partial lysis of host cell membrane, which means that once the protein is produced and activated, the protein can cause the host cell to lyse.
  
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<!-- Uncomment this to enable Functional Parameter display
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On the basis of its special biological function, it's likely to use lysis protein as a cellular structure breaker. In this year, our team decided to add a Tryptophan attenuator between a RBS and the lysis gene, making it possible to switch off or switch on the lysing mechanism  by controlling the tryptophan concentration of medium, so that the lysis protein can better serve in our project when we need to break our engineering cells to extract our product.
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===Usage and Biology===
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The lysis gene from colicin-producing strains of bacteria encodes the lysis protein which can cause the host cell to lyse as long as the protein is activated. On the basic of its biological function, we can use lysis gene to break our engineering E.coli and release the  interior cell contents when it's time to extract our product-shRNA by adding a Tryptophan attenuator between a RBS and lysis gene.
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Before the experiment of Trp_Lysis gene. We have done the T7 promotor_lysis gene characterization experiment with IPTG inducing in LB liquid medium(illustrated with Fig.2).
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SZU-China 2019 iGEM team constructed a plasmid with BBa_K1475900 (Promoter), BBa_K2912014 (Attenuator), BBa_K117000(lysis), BBa_K3257020(terminator)(illustrated in Fig.1).
  
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According to the characterization experiment's result, we can draw a conclusion that once the lysis protein is produced by IPTG inducing, their growth will be significantly inhibited.
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<div>
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<center><html><img src='https://2019.igem.org/wiki/images/5/5c/T--SZU-CHINA--fig.1.png' style="width:50%;margin:0 auto">
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<center> Fig.1 Plasmid construction of Trp_lysis </center></html></center>
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</div>
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Before the official experiment of Trp_Lysis gene. We have done the T7 promotor_lysis gene characterization experiment with IPTG inducing in LB liquid medium(illustrated in Fig.2).
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<div>
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<center><html><img src='https://2019.igem.org/wiki/images/d/d9/T--SZU-CHINA--fig._7.png' style="width:50%;margin:0 auto">
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<center> Fig.2  OD600 of two different treated T7 promotor_lysis samples </center></html></center>
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</div>
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According to the characterization experiment's result, we can draw a conclusion that once the lysis protein is produced with IPTG inducing by HT115 (DE3) E.coli, their growth will be significantly inhibited.
 
   
 
   
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In our next step, we transformed the expression vector into HT115 (DE3) E.coli by heat-shock method, culturing in LB liquid medium to exact exponential phase. Afterwards, we started a cell growth curve experiment of our engineering E.coli in different tryptophan concentration gradients and then we calculated their survival rate by use (illustrated with Fig.3).
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In our next step, we transformed the expression vector into HT115 (DE3) E.coli by heat-shock method, culturing in LB liquid medium to exact exponential phase, and then moved to fresh LB liquid medium with different concentration of  tryptophan, starting a eight-hour cell growth curve experiment of our engineering E.coli and then we measured the OD600 of each groups every two hours. Finally, we calculated their survival rate by using OD600 of the experimental group divided by OD600 of the blank group (illustrated in Fig.3).
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/3/37/T--SZU-CHINA--improved_new_data.jpg' style="width:50%;margin:0 auto">
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<center> Fig.3 The survival rate of E. coli with Trp-Lysis  </center></html></center>
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</div>
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Besides, we also did a culturing in LB solid medium experiment in tryptophan concentration gradient.(illustrated in Fig.4)
  
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Besides, we also did a culturing in LB solid medium experiment in different tryptophan concentration gradients.(illustrated with Fig.4)
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<div>
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<center><html><img src='https://2019.igem.org/wiki/images/4/4e/T--SZU-CHINA--fig._4.png' style="width:50%;margin:0 auto">
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<center> Fig.4 growth of Trp_lysis E.coli under different treated </center></html></center>
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</div>
  
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In contrast with T7 promotor_lysis with IPTG inducing group(illustrated with Fig.5).
 
  
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Compared to T7 promotor-lysis, the Trp_Lysis gene obviously has the advantage which is able to kill the host cell by breaking their structure in a controlled way. In other words, we can switch off or switch on the killing metabolism by controlling the tryptophan concentration of the culture medium, and the concentration critical valve is around 0.3%(if the concentration is more than 0.3%, the killing metabolism will be closed so that the host cells can grow as usual)
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<div>
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<center><html><img src='https://2019.igem.org/wiki/images/6/61/T--SZU-CHINA--fig_5.jpg' style="width:50%;margin:0 auto">
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<center> Fig.5 growth of T7 promotor_lysis E.coli under different treated </center></html></center>
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</div>
  
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In contrast with T7 promotor_lysis with IPTG inducing group(illustrated in Fig.5). The Trp_Lysis metabolism obviously has the advantage which is able to kill the host cell by breaking their structure in a controlled way. In other words, we can switch off or switch on the lysing mechanism by controlling the tryptophan concentration of the culture medium, and the result indicates that the concentration critical valve of tryptophan is around 0.3% which means that if the concentration is more than 0.3%, the killing metabolism will be closed so that the host cells can grow as usual.
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  

Latest revision as of 02:56, 22 October 2019

Trp_Lysis gene

Trp_Lysis gene expression can be controlled by the concentration of Tryptophan

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

SZU-China 2019 iGEM team

The lysis gene from colicin-producing strains of bacteria encodes the lysis protein which is only 4872Da in molecular weight and performs two functions that are instrumental to the activity of Colicin E7 (ColE7):one of its function is to Release of ColE7 from ColE7—Immunity complex and the other is Partial lysis of host cell membrane, which means that once the protein is produced and activated, the protein can cause the host cell to lyse.

On the basis of its special biological function, it's likely to use lysis protein as a cellular structure breaker. In this year, our team decided to add a Tryptophan attenuator between a RBS and the lysis gene, making it possible to switch off or switch on the lysing mechanism by controlling the tryptophan concentration of medium, so that the lysis protein can better serve in our project when we need to break our engineering cells to extract our product.

SZU-China 2019 iGEM team constructed a plasmid with BBa_K1475900 (Promoter), BBa_K2912014 (Attenuator), BBa_K117000(lysis), BBa_K3257020(terminator)(illustrated in Fig.1).

Fig.1 Plasmid construction of Trp_lysis

Before the official experiment of Trp_Lysis gene. We have done the T7 promotor_lysis gene characterization experiment with IPTG inducing in LB liquid medium(illustrated in Fig.2).

Fig.2 OD600 of two different treated T7 promotor_lysis samples

According to the characterization experiment's result, we can draw a conclusion that once the lysis protein is produced with IPTG inducing by HT115 (DE3) E.coli, their growth will be significantly inhibited.

In our next step, we transformed the expression vector into HT115 (DE3) E.coli by heat-shock method, culturing in LB liquid medium to exact exponential phase, and then moved to fresh LB liquid medium with different concentration of tryptophan, starting a eight-hour cell growth curve experiment of our engineering E.coli and then we measured the OD600 of each groups every two hours. Finally, we calculated their survival rate by using OD600 of the experimental group divided by OD600 of the blank group (illustrated in Fig.3).

Fig.3 The survival rate of E. coli with Trp-Lysis

Besides, we also did a culturing in LB solid medium experiment in tryptophan concentration gradient.(illustrated in Fig.4)

Fig.4 growth of Trp_lysis E.coli under different treated


Fig.5 growth of T7 promotor_lysis E.coli under different treated

In contrast with T7 promotor_lysis with IPTG inducing group(illustrated in Fig.5). The Trp_Lysis metabolism obviously has the advantage which is able to kill the host cell by breaking their structure in a controlled way. In other words, we can switch off or switch on the lysing mechanism by controlling the tryptophan concentration of the culture medium, and the result indicates that the concentration critical valve of tryptophan is around 0.3% which means that if the concentration is more than 0.3%, the killing metabolism will be closed so that the host cells can grow as usual.