Difference between revisions of "Part:BBa K2963032:Design"
 
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===Design Notes===
 
===Design Notes===
 
   
 
   
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The strength of racE gene expression affects the proportion of D/L glutamate monomer in γ-PGA. In our project, we wanted to regulate the expression of the racE gene to produce γ-PGA with different D/L-glutamate monomer ratios.  
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The strength of <i>racE</i> gene expression affects the proportion of D/L glutamate monomer in γ-PGA. In our project, we wanted to regulate the expression of the <i>racE</i> gene to produce γ-PGA with different D/L-glutamate monomer ratios.  
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Tac Promoter contains a kind of operator gene called lacO. We changed the number of operator gene in tac promoter assembling other basic parts to form our composite parts: BBa_K2963032 and BBa_K2963033. We assembled these two parts with our favorite part BBa_K2963009 to produce different D/L glutamic acid monomer ratios. Analysis of the results of the preliminary fermentation experiments showed that we can roughly produce γ-PGA containing different ratios of D/L glutamic acid monomers. Detailed experimental steps and experimental results please visit our EXPERIMENT page.
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Tac promoter contains <i>lacO</i>. We changed the number of operator gene in tac promoter assembling other basic parts to form composite  
 +
this part. We assembled it with <i>capB*CA</i> genes to produce different D/L glutamic acid monomer ratios. Analysis of the results of the preliminary fermentation experiments showed that we could roughly produce γ-PGA containing different ratios of D/L glutamic acid monomers. Detailed experimental steps and experimental results please visit our experiment page.
 +
 
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Determination of glutamate racemase activity:
 +
The cells ferment for 24 h, and the fermentation broth is centrifuged at 4°C. Collect the cells at 10000 rpm. Wash and centrifuge the cells using 0.85% physiological saline. Repeat the wash 3 times.
 +
The cells are suspended in p H 8.0, 0.1 M Tris-HCl buffer. Sonicate for 10 min in an ice bath. Centrifuge at 12000 rpm for 30 min, and the supernatant (crude enzyme solution) is taken for immediate determination of the relevant enzyme activity.
 +
Using 100 μL of crude enzyme solution reacts with 100 μL of substrate (0.5 g/L L-glutamic acid) at 30 °C for 30 min and the reaction is terminated by boiling water bath. The content of D-glutamic acid in the reaction solution is determined by a high performance liquid phase method.
  
 
===Source===
 
===Source===
  
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racE from Bacillus Genome.
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<i>racE</i> from <i>Bacillus</i> Genome.
  
 
===References===
 
===References===

Latest revision as of 14:19, 19 October 2019


racE- encoding racemase


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 911
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The strength of racE gene expression affects the proportion of D/L glutamate monomer in γ-PGA. In our project, we wanted to regulate the expression of the racE gene to produce γ-PGA with different D/L-glutamate monomer ratios. Tac promoter contains lacO. We changed the number of operator gene in tac promoter assembling other basic parts to form composite this part. We assembled it with capB*CA genes to produce different D/L glutamic acid monomer ratios. Analysis of the results of the preliminary fermentation experiments showed that we could roughly produce γ-PGA containing different ratios of D/L glutamic acid monomers. Detailed experimental steps and experimental results please visit our experiment page.

Determination of glutamate racemase activity: The cells ferment for 24 h, and the fermentation broth is centrifuged at 4°C. Collect the cells at 10000 rpm. Wash and centrifuge the cells using 0.85% physiological saline. Repeat the wash 3 times. The cells are suspended in p H 8.0, 0.1 M Tris-HCl buffer. Sonicate for 10 min in an ice bath. Centrifuge at 12000 rpm for 30 min, and the supernatant (crude enzyme solution) is taken for immediate determination of the relevant enzyme activity. Using 100 μL of crude enzyme solution reacts with 100 μL of substrate (0.5 g/L L-glutamic acid) at 30 °C for 30 min and the reaction is terminated by boiling water bath. The content of D-glutamic acid in the reaction solution is determined by a high performance liquid phase method.

Source

racE from Bacillus Genome.

References

1.Keitarou K. Roles and regulation of the glutamate racemase isogenes, racE and yrpC, in Bacillus subtilis[J]. Microbiology, 2004, 9(150): 2911-2920.

2. Feng Jiang, Gaofu Qi, Zhixia Ji. Expression of glr gene encoding glutamate racemase in Bacillus licheniformis WX-02 and its regulatory effects on synthesis of poly-γ-glutamic acid[J]. Biotechnology Letters, 2011, 33: 1837-1840.