Difference between revisions of "Part:BBa K2971001"

Latest revision as of 00:09, 22 October 2019

crtI from Deinococcus radiodurans

This part is the gene crtI (dr0861) from the extremophile Deinococcus radiodurans and encodes phytoene desaturase (CrtI). CrtI catalyzes the desaturation of phytoene (a colorless compound) into lycopene (a deep red compound)[1]. The desaturation produces a polyene chromophore. It is this chromophore that is utilized in the biogenic solar cell (see design page) to absorb energy from light.

The UiOslo 2019 team used this gene in a composite part (BBa_K2971004) to produce the red pigment lycopene, in Escherichia coli, by inserting it into a vector along with the genes crtE and crtI. This composite part produced red cells when expressed in Escherichia coli confirming that the part functions as intended.

The part was cloned into an expression vector under the arabionose inducible promotor araC. Successful cloning was confirmed with colony PCR of transformed colonies (figure 1). Colonies that carried the insert was sequenced to check for the potential presence of mutations or frame-shifts.

Figure 1: Colony-PCR of cells transformed with our basic parts (crtE, crtI and crtB)
Primers were designed to amplify the part of the intended plasmid that contains the insert.
Numbers denote the colony checked with the primers. 14 and 23 are PCR products from empty vectors that function as controls. Colony 1-12 and 15 shows that we had several colonies of crtE with the insert. 16-20 shows colonies carrying the crtB insert. 21 show that we had one colony with the insert.

We expressed the protein in E. coli (DH5α)(figure 2). We detected a faint protein band during our SDS analysis; it is likely the expression was not well-optimized.

Figure 2: SDS-page of colonies expressing our basic parts
The expression of our basic parts were tested in E.coli (DH5α). We could detect a faint band of CrtE and CrtI.

References

1. Schaub P, Yu Q, Gemmecker S, Poussin-Courmontagne P, Mailliot J, McEwen AG, et al. (2012) On the Structure and Function of the Phytoene Desaturase CRTI from Pantoea ananatis, a Membrane-Peripheral and FAD-Dependent Oxidase/Isomerase. PLoS ONE 7(6): e39550. https://doi.org/10.1371/journal.pone.0039550

Sequence and Features