Difference between revisions of "Part:BBa K143006:Design"

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===<big>'''3' Integration sequence for the EpsE locus of ''B. subtilis'''''</big>===
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===<big>'''3' Integration sequence for the epsE locus of ''B. subtilis'''''</big>===
  
 
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===Design Notes===
 
===Design Notes===
  
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The EpsE integration sequences were based upon the EpsE (aka YveO) gene sequence<cite>#1</cite> and the sequence of the upstream region on the chromosome (found using NCBI's sequence viewer). The upstream and EpsE gene sequence was analysed for restriction sites and primers (with biobrick prefix and suffix sequences) for two approximately equally sized integration sequences were desgined. The integration sequences were then produced by PCR cloning with Pfu DNA polymerase
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The epsE integration sequences were based upon the epsE (aka yveO) gene sequence<cite>#1</cite> and the sequence of the upstream region on the chromosome (found using NCBI's sequence viewer). The upstream and epsE gene sequence was analysed for restriction sites and primers (with biobrick prefix and suffix sequences) for two approximately equally sized integration sequences were desgined. The integration sequences were then produced by PCR cloning with Pfu DNA polymerase
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====Template====
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''B. subtilis'' Chromosome
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*We thank Dr. Angelika Grundling, Centre for Molecular Microbiology and Infection, Imperial College for providing the chromosome preparation for our PCR
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====Forward Primer====
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5'- GCT CTA GAG CGC GCC GTC TGT AAA AG - 3'
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====Reverse Primer====
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5'- GGA CTA GTA GCA TAA AGG CGC GAA TTA ACG -3'
  
 
===Source===
 
===Source===

Latest revision as of 00:20, 29 October 2008

3' Integration sequence for the epsE locus of B. subtilis



Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 211
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The epsE integration sequences were based upon the epsE (aka yveO) gene sequence#1 and the sequence of the upstream region on the chromosome (found using NCBI's sequence viewer). The upstream and epsE gene sequence was analysed for restriction sites and primers (with biobrick prefix and suffix sequences) for two approximately equally sized integration sequences were desgined. The integration sequences were then produced by PCR cloning with Pfu DNA polymerase

Template

B. subtilis Chromosome

  • We thank Dr. Angelika Grundling, Centre for Molecular Microbiology and Infection, Imperial College for providing the chromosome preparation for our PCR

Forward Primer

5'- GCT CTA GAG CGC GCC GTC TGT AAA AG - 3'

Reverse Primer

5'- GGA CTA GTA GCA TAA AGG CGC GAA TTA ACG -3'

Source

The 3’ integration sequence was taken from the B.subtilis chromosome and is homologous to the middle section of the EpsE gene. It was produced by PCR cloning with Pfu DNA polymerase

References

<biblio>

  1. 1 pmid=9384377

</biblio>