Difference between revisions of "Part:BBa K3140002"

 
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<partinfo>BBa_K3140002 short</partinfo>
 
<partinfo>BBa_K3140002 short</partinfo>
  
PsiK is a 4-hydroxytryptamine kinase, which catalyses the conversion of 4-hydroxytryptamine to norbaeocystin.  
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PsiK is a 4-hydroxytryptamine kinase, which catalyses the conversion of 4-hydroxytryptamine to norbaeocystin.
 +
 
 +
*NCBI: [https://www.ncbi.nlm.nih.gov/protein/ASU62237.1 ASU62237.1]
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*UniProt: [https://www.uniprot.org/uniprot/P0DPA8 P0DPA8]
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*EC number: [https://enzyme.expasy.org/EC/2.7.1.222 2.7.1.222]
  
 
===Usage and Biology===
 
===Usage and Biology===
  
PsiK is a native enzyme obtained from ''Psilocybe cubensis'', which is involved in the metabolic biosynthesis of psilocybin from tryptophan. It accepts both 4-hydroxytryptamine and psilocin as substrates to yield norbaeocystin and psilocybin, respectively. Heterologous expression of PsiK has been achieved in ''Escherichia coli'' <add strain> in a <expression system>.
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The mechanism of psilocybin biosynthesis in ''Psilocybe'' sp. was recently elucidated by Fricke ''et al''.<ref name="Fricke">Fricke, J., Blei, F. & Hoffmeister, D. Enzymatic Synthesis of Psilocybin. ''Angew Chem Int Ed Engl'' '''56''', 12352-12355 (2017).</ref>, demonstrating that L-tryptophan proceeds through decarboxylation (mediated by PsiD), hydroxylation (mediated by PsiH), phosphorylation (mediated by PsiK), and finally N,N-dimethylation (mediated by PsiM) to yield psilocybin.
  
ADD:
+
PsiK is a native enzyme obtained from ''Psilocybe cubensis'', which is involved in the metabolic biosynthesis of psilocybin from tryptophan. It accepts both 4-hydroxytryptamine and psilocin as substrates to yield norbaeocystin ('''Fig. 1''') and psilocybin ('''Fig. 2'''), respectively. In a native state, PsiK is a 362 amino acid protein (40.4 kDa) with a theoretical pI of 5.26 calculated with the ExPASy ProtParam tool<ref name="ExPASy">Artimo, P. et al. ExPASy: SIB bioinformatics resource portal. ''Nucleic Acids Res'' '''40''', W597-603 (2012).</ref>.
-SDS-PAGE - pCW - LC/MAS
+
  
<span class='h3bb'>Sequence and Features</span>
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[[Image:T--Sydney_Australia--PsiK_KEGG_rxn1.gif|frame|none|'''Fig. 1''': Phosphorylation of 4-hydroxytryptamine to norbaeocystin, mediated by PsiK. The reaction is dependant upon ATP, and ADP is released as a by-product. Source: [https://www.genome.jp/dbget-bin/www_bget?reaction+R11933 KEGG]  ]]
<partinfo>BBa_K3140002 SequenceAndFeatures</partinfo>
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 +
[[Image:T--Sydney_Australia--PsiK_KEGG_rxn2.gif|frame|none|'''Fig. 2''': Phosphorylation of psilocin to psilocybin, mediated by PsiK. The reaction is dependant upon ATP, and ADP is released as a by-product. Source: [https://www.genome.jp/dbget-bin/www_bget?reaction+R08480 KEGG]  ]]
 +
 +
Heterologous expression of PsiK has been achieved in a T7 induction system using  pET-28c(+) transformed into ''Escherichia coli'' BL21(DE3), co-transformed with chaperone plasmid pGro7 ('''Fig. 3'''), resulting in a 397 amino acid polypeptide, with a computed molecular weight of 44.2 kDa.
 +
 +
[[Image:T--Sydney_Australia--PsiK_pET28c_map.png|700px|frame|none|'''Fig. 3''': pET-28c(+):PsiK plasmid map, showing C-terminal histidine tag, and T7 promoter under the control of the ''lac'' operator. Translated peptide is shown as the thin lime green arrow.]]
 +
 +
A band consistent with expression of PsiK in cells induced with IPTG was observed on polyacrylamide gel electrophoresis ('''Fig. 4''').
 +
 +
[[Image:T--Sydney Australia--SDS soluble PsiDKM.png|900px|thumb|none|'''Fig. 4''': Polyacrylamide gel electrophoresis image of soluble protein extract from uninduced and IPTG induced ''E. coli'' BL21(DE3)::pGro7 cells containing pET-28c(+):PsiD, pET-28c(+):PsiK, and pET-28c(+):PsiM, run on an Mini-PROTEAN® TGX Stain-Free™ precast gel (Bio-Rad) at 120V for 60 minutes.]]
 +
 +
Activity of PsiK was confirmed with LC/MS. Protein extract from ''E. coli'' BL21(DE3) cells co-transformed with pET-28c(+):PsiK and pGro7 was subject to LC/MS, both with and without the addition of the PsiK substrate, 4-hydroxytryptamine. The PsiK product, norbaeocystin, was only identified in the sample to which 4-hydroxytryptamine was added, confirming the activity of PsiK ''in vitro'' ('''Table 1''').
 +
 +
While norbaeocystin was observed in the sample to which 4-hydroxytryptamine was added ('''Table 1'''), it was not observed when 4-hydroxytryptamine was absent ('''Table 2''').
 +
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{| class="wikitable"
 +
|+ ''Table 1'': Identified compounds in LC/MS of protein extract of ''E. coli'' BL21(DE3) co-transformed with pET-28c(+):PsiK and pGro7, with the addition of 4-hydroxytryptamine.
 +
|-
 +
! Retention time (min)
 +
! Signal/noise ratio
 +
! Measured m/z
 +
! Formula
 +
! Ion identity
 +
|-
 +
| 1.16
 +
| 0.9
 +
| 257.0687
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| C10H14N2O4P
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| norbaeocystin
 +
|-
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| 2.63
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| 20.7
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| 177.1024
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| C10H13N2O
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| hydroxytryptamine
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|-
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| 3.46
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| 2.4
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| 205.0972
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| C11H13N2O2
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| tryptophan
 +
|-
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| 10.14
 +
| 5.1
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| 285.1336
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| C9H18N8OP
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| unknown
 +
|-
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| 10.14
 +
| 5.1
 +
| 285.1336
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| C14H21O6
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| unknown
 +
|}
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{| class="wikitable"
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|+ ''Table 2'': Identified compounds in LC/MS of protein extract of ''E. coli'' BL21(DE3) co-transformed with pET-28c(+):PsiK and pGro7, without the addition of 4-hydroxytryptamine..
 +
|-
 +
! Retention time (min)
 +
! Signal/noise ratio
 +
! Measured m/z
 +
! Formula
 +
! Ion identity
 +
|-
 +
| 10.16
 +
| 11.3
 +
| 285.1336
 +
| C14H21O6
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| unknown
 +
|-
 +
| 10.16
 +
| 11.3
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| 285.1336
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| C9H18N8OP
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| unknown
 +
|}
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''In vivo'' expression of PsiK was also confirmed. PsiD, PsiK, and PsiM were cloned into a pUS250 backbone as a gene cluster using Golden Gate cloning, yielding pUS387 ('''Fig. 5'''). Expression in pUS387 is driven by a class 1 integron gene cassette Pc promoter controlled by a cumate induction system. ''E. coli'' DH5α cells co-transformed with pUS387 and pGro7 were cultured in terrific broth (TB) supplemented with 4-hydroxytryptamine. Whole cell culture was subject to LC/MS.
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[[Image:T--Sydney_Australia--pUS387_map.png|700px|frame|none|'''Fig. 5''': pUS387 plasmid map, showing PsiD, PsiK, and PsiM genes organised in a cluster, driven by a class 1 integron gene cassette Pc promoter, flanked by CuO, a cumate repressor binding operator.]]
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{| class="wikitable"
 +
|+ ''Table 3'': Identified compounds in LC/MS of protein extract of ''E. coli'' DH5α co-transformed with pUS387 and pGro7, with the addition of 4-hydroxytryptamine.
 +
|-
 +
! Retention time (min)
 +
! Signal/noise ratio
 +
! Measured m/z
 +
! Formula
 +
! Ion identity
 +
|-
 +
| 0.56
 +
| 23.2
 +
| 271.0817
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| C12H15O7
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| unknown
 +
|-
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| 1.16
 +
| 12.4
 +
| 257.0689
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| C10H14N2O4P
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| norbaeocystin
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|-
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| 1.9
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| 0.9
 +
| 271.0844
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| C11H16N2O4P
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| baeocystin
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|-
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| 2.75
 +
| 5.2
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| 177.1023
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| C10H13N2O
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| hydroxytryptamine
 +
|-
 +
| 5.08
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| 6.4
 +
| 205.0972
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| C11H13N2O2
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| tryptophan
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|-
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| 5.82
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| 6.4
 +
| 161.1074
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| C10H13N2
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| tryptamine
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|-
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| 10.15
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| 14.4
 +
| 285.1335
 +
| C14H21O6
 +
| unknown
 +
|-
 +
| 10.15
 +
| 14.4
 +
| 285.1335
 +
| C9H18N8OP
 +
| unknown
 +
|}
 +
 +
The ''in vivo'' activity of PsiK is confirmed by observation of PsiK product norbaeocystin ('''Fig. 6''').
 +
 +
[[Image:T--Sydney_Australia--norbaeo16_387_lcms.png|frame|none|'''Fig. 6''': Mass spectra obtained LC/MS of protein extract of ''E. coli'' DH5α co-transformed with pUS387 and pGro7, with the addition of 4-hydroxytryptamine. A peak at m/z = 257.06857 with chemical formula C10H14N2O4P was identified, matching PsiK product norbaeocystin.]]
 +
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Finally, confirmation of expression in pET-28c(+):PsiK was gained by gained by peptide mass fingerprinting ('''Fig. 7'''), which matched to PsiM with an identity score of 49 (0.00011 expected) and protein sequence coverage of 49%.
 +
 +
[[Image:T--Sydney_Australia--peptide_gel.jpg|900px|thumb|none|'''Fig. 7''': Polyacrylamide gel containing soluble cell lysate profiles from pET-28c(+):PsiM and pET-28c(+):PsiK cultures believed to be expressing soluble PsiM and PsiK, stained with Coomassie Blue. The bands highlighted in red were cut, destained with 40% acetonitrile/60% 20mM ammonium bicarbonate. Cut bands were then dehydrated, and then rehydrated with 12ng/ul porcine trypsin at 4°C for 30min. Excess trypsin was removed and 10 μl of 20mM ammonium bicarbonate was added. Following overnight incubation at 37°C. Peptide masses were determined using mass spectroscopy, and samples were identified using a Mascot peptide mass fingerprint search.]]
 +
 +
Given these results, we conclude that we have successfully expressed the 4-hydroxytryptamine kinase decarboxylase PsiK from ''Psilocybe cubensis'' in ''Escherichia coli'' both ''in vivo'' and ''in vitro''.
 +
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<span class='h3bb'>'''Sequence and Features'''</span>
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<partinfo>BBa_K3140002 SequenceAndFeatures</partinfo>
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
<partinfo>BBa_K3140002 parameters</partinfo>
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<partinfo>BBa_K3140000 parameters</partinfo>
 
<!-- -->
 
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===References===

Latest revision as of 12:33, 21 October 2019


PsiK - 4-hydroxytryptamine kinase from Psilocybe cubensis

PsiK is a 4-hydroxytryptamine kinase, which catalyses the conversion of 4-hydroxytryptamine to norbaeocystin.

Usage and Biology

The mechanism of psilocybin biosynthesis in Psilocybe sp. was recently elucidated by Fricke et al.[1], demonstrating that L-tryptophan proceeds through decarboxylation (mediated by PsiD), hydroxylation (mediated by PsiH), phosphorylation (mediated by PsiK), and finally N,N-dimethylation (mediated by PsiM) to yield psilocybin.

PsiK is a native enzyme obtained from Psilocybe cubensis, which is involved in the metabolic biosynthesis of psilocybin from tryptophan. It accepts both 4-hydroxytryptamine and psilocin as substrates to yield norbaeocystin (Fig. 1) and psilocybin (Fig. 2), respectively. In a native state, PsiK is a 362 amino acid protein (40.4 kDa) with a theoretical pI of 5.26 calculated with the ExPASy ProtParam tool[2].

Fig. 1: Phosphorylation of 4-hydroxytryptamine to norbaeocystin, mediated by PsiK. The reaction is dependant upon ATP, and ADP is released as a by-product. Source: KEGG
Fig. 2: Phosphorylation of psilocin to psilocybin, mediated by PsiK. The reaction is dependant upon ATP, and ADP is released as a by-product. Source: KEGG

Heterologous expression of PsiK has been achieved in a T7 induction system using pET-28c(+) transformed into Escherichia coli BL21(DE3), co-transformed with chaperone plasmid pGro7 (Fig. 3), resulting in a 397 amino acid polypeptide, with a computed molecular weight of 44.2 kDa.

Fig. 3: pET-28c(+):PsiK plasmid map, showing C-terminal histidine tag, and T7 promoter under the control of the lac operator. Translated peptide is shown as the thin lime green arrow.

A band consistent with expression of PsiK in cells induced with IPTG was observed on polyacrylamide gel electrophoresis (Fig. 4).

Fig. 4: Polyacrylamide gel electrophoresis image of soluble protein extract from uninduced and IPTG induced E. coli BL21(DE3)::pGro7 cells containing pET-28c(+):PsiD, pET-28c(+):PsiK, and pET-28c(+):PsiM, run on an Mini-PROTEAN® TGX Stain-Free™ precast gel (Bio-Rad) at 120V for 60 minutes.

Activity of PsiK was confirmed with LC/MS. Protein extract from E. coli BL21(DE3) cells co-transformed with pET-28c(+):PsiK and pGro7 was subject to LC/MS, both with and without the addition of the PsiK substrate, 4-hydroxytryptamine. The PsiK product, norbaeocystin, was only identified in the sample to which 4-hydroxytryptamine was added, confirming the activity of PsiK in vitro (Table 1).

While norbaeocystin was observed in the sample to which 4-hydroxytryptamine was added (Table 1), it was not observed when 4-hydroxytryptamine was absent (Table 2).

Table 1: Identified compounds in LC/MS of protein extract of E. coli BL21(DE3) co-transformed with pET-28c(+):PsiK and pGro7, with the addition of 4-hydroxytryptamine.
Retention time (min) Signal/noise ratio Measured m/z Formula Ion identity
1.16 0.9 257.0687 C10H14N2O4P norbaeocystin
2.63 20.7 177.1024 C10H13N2O hydroxytryptamine
3.46 2.4 205.0972 C11H13N2O2 tryptophan
10.14 5.1 285.1336 C9H18N8OP unknown
10.14 5.1 285.1336 C14H21O6 unknown
Table 2: Identified compounds in LC/MS of protein extract of E. coli BL21(DE3) co-transformed with pET-28c(+):PsiK and pGro7, without the addition of 4-hydroxytryptamine..
Retention time (min) Signal/noise ratio Measured m/z Formula Ion identity
10.16 11.3 285.1336 C14H21O6 unknown
10.16 11.3 285.1336 C9H18N8OP unknown

In vivo expression of PsiK was also confirmed. PsiD, PsiK, and PsiM were cloned into a pUS250 backbone as a gene cluster using Golden Gate cloning, yielding pUS387 (Fig. 5). Expression in pUS387 is driven by a class 1 integron gene cassette Pc promoter controlled by a cumate induction system. E. coli DH5α cells co-transformed with pUS387 and pGro7 were cultured in terrific broth (TB) supplemented with 4-hydroxytryptamine. Whole cell culture was subject to LC/MS.

Fig. 5: pUS387 plasmid map, showing PsiD, PsiK, and PsiM genes organised in a cluster, driven by a class 1 integron gene cassette Pc promoter, flanked by CuO, a cumate repressor binding operator.
Table 3: Identified compounds in LC/MS of protein extract of E. coli DH5α co-transformed with pUS387 and pGro7, with the addition of 4-hydroxytryptamine.
Retention time (min) Signal/noise ratio Measured m/z Formula Ion identity
0.56 23.2 271.0817 C12H15O7 unknown
1.16 12.4 257.0689 C10H14N2O4P norbaeocystin
1.9 0.9 271.0844 C11H16N2O4P baeocystin
2.75 5.2 177.1023 C10H13N2O hydroxytryptamine
5.08 6.4 205.0972 C11H13N2O2 tryptophan
5.82 6.4 161.1074 C10H13N2 tryptamine
10.15 14.4 285.1335 C14H21O6 unknown
10.15 14.4 285.1335 C9H18N8OP unknown

The in vivo activity of PsiK is confirmed by observation of PsiK product norbaeocystin (Fig. 6).

Fig. 6: Mass spectra obtained LC/MS of protein extract of E. coli DH5α co-transformed with pUS387 and pGro7, with the addition of 4-hydroxytryptamine. A peak at m/z = 257.06857 with chemical formula C10H14N2O4P was identified, matching PsiK product norbaeocystin.

Finally, confirmation of expression in pET-28c(+):PsiK was gained by gained by peptide mass fingerprinting (Fig. 7), which matched to PsiM with an identity score of 49 (0.00011 expected) and protein sequence coverage of 49%.

Fig. 7: Polyacrylamide gel containing soluble cell lysate profiles from pET-28c(+):PsiM and pET-28c(+):PsiK cultures believed to be expressing soluble PsiM and PsiK, stained with Coomassie Blue. The bands highlighted in red were cut, destained with 40% acetonitrile/60% 20mM ammonium bicarbonate. Cut bands were then dehydrated, and then rehydrated with 12ng/ul porcine trypsin at 4°C for 30min. Excess trypsin was removed and 10 μl of 20mM ammonium bicarbonate was added. Following overnight incubation at 37°C. Peptide masses were determined using mass spectroscopy, and samples were identified using a Mascot peptide mass fingerprint search.

Given these results, we conclude that we have successfully expressed the 4-hydroxytryptamine kinase decarboxylase PsiK from Psilocybe cubensis in Escherichia coli both in vivo and in vitro.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 864
    Illegal SapI.rc site found at 973


References

  1. Fricke, J., Blei, F. & Hoffmeister, D. Enzymatic Synthesis of Psilocybin. Angew Chem Int Ed Engl 56, 12352-12355 (2017).
  2. Artimo, P. et al. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res 40, W597-603 (2012).