Difference between revisions of "Part:BBa K2922025"

 
 
(3 intermediate revisions by the same user not shown)
Line 2: Line 2:
 
__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K2922025 short</partinfo>
 
<partinfo>BBa_K2922025 short</partinfo>
 +
===Summary===
 +
Abbreviated as Eimm, the molecular weight of Colicin-E1 immunity protein is 13 kDa, and the protein is encoded by gene <i>imm</i>. In wild strains of <i>E.coli</i>, the protein is able to protect cells, which harbors the plasmid ColE1 encoding Colicin-E1, against Colicin-E1. Immunity proteins interact with the pore-forming domain in the inner membrane. And the inactivation of Colicin-E1 occurs via interactions between the voltage-gated region and the transmembrane helices of the immunity protein. This protein will prevent <i>E.coli</i> secreting Colicin-E1 from killing themselves.<ref>[1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC207876/</ref>(Fig.1)
 +
<table><tr><th>[[File:E1design.png|thumb|720px|Fig.1 Eimm prevents <i>E.coli</i> BL21 (DE3) secreting Colicin-E1 from killing themselves.]]</th><th></table>
 +
===Identification===
 +
When we were building this circuit, we did the nucleic acid gel electrophoresis experiment to verify. After the circuit was built, we sent the plasmid to sequence, and got the correct sequencing.
 +
After new molecular cloning experiments, we did Enzyme-Cut identification to certify the plasmid was correct. We used the <i>Xba</i>I and <i>Pst</i>I to cut the plasmid, then we got the target separate fragment- 342bp. (Fig.2)
 +
<table><tr><th>[[File:Eimm Nimm.png|thumb|300px|Fig.2 The result of this plasmid cut with enzyme <i>Xba</i>I and <i>Pst</i>I.]]</th><th></table>
  
−
This protein is able to protect a cell, which harbors the plasmid Colicin E1
+
===Sequence and Features===
−
encoding colicin E1, against colicin E1.
+
−
 
+
−
 
+
−
<!-- Add more about the biology of this part here
+
−
===Usage and Biology===
+
−
 
+
−
<!-- -->
+
−
<span class='h3bb'>Sequence and Features</span>
+
 
<partinfo>BBa_K2922025 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2922025 SequenceAndFeatures</partinfo>
−
 
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
Line 19: Line 17:
 
<partinfo>BBa_K2922025 parameters</partinfo>
 
<partinfo>BBa_K2922025 parameters</partinfo>
 
<!-- -->
 
<!-- -->
 +
===Reference===

Latest revision as of 17:50, 20 October 2019


Colicin-E1 immunity protein coding region

Summary

Abbreviated as Eimm, the molecular weight of Colicin-E1 immunity protein is 13 kDa, and the protein is encoded by gene imm. In wild strains of E.coli, the protein is able to protect cells, which harbors the plasmid ColE1 encoding Colicin-E1, against Colicin-E1. Immunity proteins interact with the pore-forming domain in the inner membrane. And the inactivation of Colicin-E1 occurs via interactions between the voltage-gated region and the transmembrane helices of the immunity protein. This protein will prevent E.coli secreting Colicin-E1 from killing themselves.[1](Fig.1)

Fig.1 Eimm prevents E.coli BL21 (DE3) secreting Colicin-E1 from killing themselves.

Identification

When we were building this circuit, we did the nucleic acid gel electrophoresis experiment to verify. After the circuit was built, we sent the plasmid to sequence, and got the correct sequencing. After new molecular cloning experiments, we did Enzyme-Cut identification to certify the plasmid was correct. We used the XbaI and PstI to cut the plasmid, then we got the target separate fragment- 342bp. (Fig.2)

Fig.2 The result of this plasmid cut with enzyme XbaI and PstI.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Reference

  1. ↑ [1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC207876/