Difference between revisions of "Part:BBa K3076400:Design"

Latest revision as of 13:16, 13 October 2019

dsDNA substrate with KanR gene for cusA knockout in E. coli by Lambda Red Recombineering

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

Source

The genomic sequence of cusA gene was extracted from NCBI (ACCESSION: NC_000913 REGION: 598714..601857). The kanamycin resistance gene was extracted from the sequence of pET28a plasmid sequence from addgene.org. Double terminator was extracted from iGEM part registry (BBa B0015) which is the most commonly used double terminator with high efficiency.

Design Notes

The recombination site was chosen to be near the gene's 5' end of the coding strand to increase the chance of successful knockout.

@@ Line 5: / Line 5: @@
 <partinfo>BBa_K3076400 SequenceAndFeatures</partinfo>
+===Source===
+The genomic sequence of <i>cusA</i> gene was extracted from NCBI (ACCESSION: NC_000913 REGION: 598714..601857). The kanamycin resistance gene was extracted from the sequence of pET28a plasmid sequence from addgene.org. Double terminator was extracted from iGEM part registry <html>(<a href="https://parts.igem.org/Part:BBa_B0015">BBa B0015</a>)</html> which is the most commonly used double terminator with high efficiency.
 ===Design Notes===
-N/A
+The recombination site was chosen to be near the gene's 5' end of the coding strand to increase the chance of successful knockout.
 ===References===
-The genomic sequence of cusA gene was  extracted from NCBI (ACCESSION: NC_000913 REGION: 598714..601857). The kanamycin resistance gene was extracted from the sequence of pET28a plasmid sequence. Double terminator was extracted from iGEM part registry (BBa_B0015) which is the most commonly used double terminator with high efficiency.