Difference between revisions of "Part:BBa K2996002"
 
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<partinfo>BBa_K2996002 short</partinfo>
 
<partinfo>BBa_K2996002 short</partinfo>
  
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a place for spacer insertion
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The cassette consists of 69 bp of the respective leader, including the sequence elements essential for adaptation, and one spacer flanked by two repeats. Wildtype E.coli has two types of CRISPRER array, with their repeat sequence differ in one base pair. We applied A-type repeat sequence to our design, due to a higher acquisition ratio demonstrated by previously published papers.
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#Usage and Biology
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In our design, this integration cassette RSRL in pRead consists of a leader and two repeats interspaced by a spacer fused downstream, to the complete coding sequence of an out-of-frame EGFP gene (EGFP +2).
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Originally, there is a stop codon within the RSRL sequence and the fluorescent protein gene was not in the correct reading frame, so there would be no fluorescent protein expressed. After induction, spacer acquisition carried out by cas1/2 would cause an addition of 61 base pairs, a protospacer and another repeat sequence, thus resulting in frame shifting. In that case, the stop codon would disappear, and EGFP enter the correct reading frame.
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When you want to read the information, inducer should be added and expression of fluorescent protein would be activated.
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#result
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图
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PCR
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Microplate reader
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Sequencing
  
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<!-- Add more about the biology of this part here
 
  
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[Usage and Biology]  after insertion, stop codon is movement
 
  
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K2996002 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2996002 SequenceAndFeatures</partinfo>
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<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
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===Functional Parameters===
 
<partinfo>BBa_K2996002 parameters</partinfo>
 
<partinfo>BBa_K2996002 parameters</partinfo>
 
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[Functional Parameters]no information
 

Latest revision as of 01:03, 11 October 2019


minimal CRISPR array-A

The cassette consists of 69 bp of the respective leader, including the sequence elements essential for adaptation, and one spacer flanked by two repeats. Wildtype E.coli has two types of CRISPRER array, with their repeat sequence differ in one base pair. We applied A-type repeat sequence to our design, due to a higher acquisition ratio demonstrated by previously published papers.


  1. Usage and Biology

In our design, this integration cassette RSRL in pRead consists of a leader and two repeats interspaced by a spacer fused downstream, to the complete coding sequence of an out-of-frame EGFP gene (EGFP +2).

Originally, there is a stop codon within the RSRL sequence and the fluorescent protein gene was not in the correct reading frame, so there would be no fluorescent protein expressed. After induction, spacer acquisition carried out by cas1/2 would cause an addition of 61 base pairs, a protospacer and another repeat sequence, thus resulting in frame shifting. In that case, the stop codon would disappear, and EGFP enter the correct reading frame.

When you want to read the information, inducer should be added and expression of fluorescent protein would be activated.


  1. result
图

PCR Microplate reader Sequencing


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]