Difference between revisions of "Part:BBa K2909003"

 
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__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K2909003 short</partinfo>
 
<partinfo>BBa_K2909003 short</partinfo>
  
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Coding sequence of the LPAAT-A enzyme from Elaeis guineensis codon optimized for Chlamydomonas reinhardtii.  
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K2909003 SequenceAndFeatures</partinfo>
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=='''Introduction'''==
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<h3> 1- Biological background </h3>
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Coding sequence of the DGAT-1-2 enzyme from Elaeis guineensis codon optimized for Chlamydomonas reinhardtii.  
  
 
It catalyzes the incorporation of the third and last fatty acid at the position sn-3 of the glycerol in the triglyceride synthesis (Kennedy) pathway.  
 
It catalyzes the incorporation of the third and last fatty acid at the position sn-3 of the glycerol in the triglyceride synthesis (Kennedy) pathway.  
  
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The CDS is standardized to the C. reinhardtii MoClo Kit for the B3-B4 position by adding BbsI sites and the corresponding fusion sites on both ends.
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The CDS is standardized in the Phytobrick standard for the C. reinhardtii MoClo Kit at the B3-B4 position by adding BbsI sites and the corresponding fusion sites on both ends.
  
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<!-- Add more about the biology of this part here
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The stop codon was removed to allow for tagging at the C-terminal position, the stop codon being provided by the part on the position B5.
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===Usage and Biology===
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<h3> 2- Usage in iGEM projects </h3>
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Bio(oil)gical Factory (iGEM Sorbonne Université 2019)
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=='''Characterization'''==
  
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<!-- -->
 
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<span class='h3bb'>Sequence and Features</span>
 
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<partinfo>BBa_K2909003 SequenceAndFeatures</partinfo>
 
  
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=='''References'''==
  
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<!-- Uncomment this to enable Functional Parameter display
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<ol>
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===Functional Parameters===
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<li> Dussert, S. et al. Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition. PLANT PHYSIOLOGY 162, 1337–1358 (2013). </li>
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<partinfo>BBa_K2909003 parameters</partinfo>
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<li> Crozet, P. et al. Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii. ACS Synth. Biol. 7, 2074–2086 (2018). </li>
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<!-- -->
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<li> 1.Weber, E., Engler, C., Gruetzner, R., Werner, S. & Marillonnet, S. A Modular Cloning System for Standardized Assembly of Multigene Constructs. PLoS ONE 6, e16765 (2011).</li>
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</ol>

Latest revision as of 08:37, 30 August 2019

DGAT-1-2-B3-B4 E. guineensis codon optimized for C. reinhardtii

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 162
    Illegal PstI site found at 1590
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 162
    Illegal PstI site found at 1590
    Illegal NotI site found at 400
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1498
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 162
    Illegal PstI site found at 1590
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 162
    Illegal PstI site found at 1590
    Illegal NgoMIV site found at 531
    Illegal NgoMIV site found at 624
  • 1000
    COMPATIBLE WITH RFC[1000]


Introduction

1- Biological background

Coding sequence of the DGAT-1-2 enzyme from Elaeis guineensis codon optimized for Chlamydomonas reinhardtii.

It catalyzes the incorporation of the third and last fatty acid at the position sn-3 of the glycerol in the triglyceride synthesis (Kennedy) pathway.

The CDS is standardized in the Phytobrick standard for the C. reinhardtii MoClo Kit at the B3-B4 position by adding BbsI sites and the corresponding fusion sites on both ends.

The stop codon was removed to allow for tagging at the C-terminal position, the stop codon being provided by the part on the position B5.

2- Usage in iGEM projects

Bio(oil)gical Factory (iGEM Sorbonne Université 2019)

Characterization

References

  1. Dussert, S. et al. Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition. PLANT PHYSIOLOGY 162, 1337–1358 (2013).
  2. Crozet, P. et al. Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii. ACS Synth. Biol. 7, 2074–2086 (2018).
  3. 1.Weber, E., Engler, C., Gruetzner, R., Werner, S. & Marillonnet, S. A Modular Cloning System for Standardized Assembly of Multigene Constructs. PLoS ONE 6, e16765 (2011).