Difference between revisions of "Part:BBa K2656002"
 
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<partinfo>BBa_K2656002 short</partinfo>
 
<partinfo>BBa_K2656002 short</partinfo>
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Part BBa_K2656002 is the promoter [https://parts.igem.org/Part:BBa_R0061 BBa_R0061] compatible with both Biobrick and [http://2018.igem.org/Team:Valencia_UPV/Design GoldenBraid 3.0] assemply methods. This promoter is negatively regulated by LuxR when it is responding to Acyl-homoserine-lactone produced by LuxI. It can be combined with other compatible parts from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Valencia UPV IGEM 2018 Printeria Collection] to assemble transcriptional units with the <html><a href="https://static.igem.org/mediawiki/parts/b/bc/T--Valencia_UPV--protocols.pdf#page=27"> Golden Gate assembly protocol </a></html>.
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Part BBa_K2656002 is the repressible promoter [https://parts.igem.org/Part:BBa_R0061 BBa_R0061] compatible with both Biobrick and [http://2018.igem.org/Team:Valencia_UPV/Design GoldenBraid 3.0] assemply methods.  
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When LuxR protein is present, the Quorum Sensing responsible small molecule AHL (Acyl-homoserine-lactone) binds forming the heterodimer (LuxR.AHL), which subsequently dimerizes as the heterotetramer (LuxR.AHL)2 (Boada et al, 2017) as shown in Figure 2. This complex is the active transcription factor that represses this synthetic
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repressible promoter PluxR designed in (Egland and Greenberg, 2000).
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[[File:T--Valencia UPV--luxR luxI schemaUPV2018.png.png|400px|thumb|none|alt=LuxR represible promoter and QS.|Figure 2. Schema of the LuxR promoter functioning.]]
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This part can be combined with other compatible parts from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Valencia UPV IGEM 2018 Printeria Collection] to assemble transcriptional units with the <html><a href="https://static.igem.org/mediawiki/parts/b/bc/T--Valencia_UPV--protocols.pdf#page=27"> Golden Gate assembly protocol </a></html>.
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In order characterize this promoter we constructed the composite part [https://parts.igem.org/Part:BBa_K2656116 BBa_K2656116] using the following RBS, CDS and terminator:
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<html>
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<ul>
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<li></html>RBS [https://parts.igem.org/Part:BBa_K2656009 BBa_K2656009]: the [https://parts.igem.org/Part:B0030 B0030] RBS in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]<html></li>
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<li></html>CDS [https://parts.igem.org/Part:BBa_K2656022 BBa_K2656022]: the [https://parts.igem.org/Part:E0040 E0040] GFPmut3b sequence in its Golden Braid standardized version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]<html></li>
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<li></html>Terminator [https://parts.igem.org/Part:BBa_K2656026 BBa_K2656026]: the [https://parts.igem.org/Part:BBa_B0015 B0015] transcriptional terminator in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]<html></li>
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</ul>
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</html>
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By using this [http://2018.igem.org/Team:Valencia_UPV/Experiments#exp_protocol experimental protocol] and inducing at different AHL concentrations, we have obtained the following experimental measures (in blue dots). This measurements were compared with our  [http://2018.igem.org/Team:Valencia_UPV/Modeling#models constitutive AHL-LuxR model] to test it.
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[[File:T--Valencia_UPV_AHL_UPV2018.png|900px|thumb|none|alt=AHL experiment.|Figure 3. AHL induction experiment and comparison with our model simulation.]]
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 03:48, 18 October 2018

Promoter HSL-mediated luxR repressor

domestication.
Figure 1. DNA basic parts domestication. First construction refers to promoter GB domestication.


Part BBa_K2656002 is the repressible promoter BBa_R0061 compatible with both Biobrick and [http://2018.igem.org/Team:Valencia_UPV/Design GoldenBraid 3.0] assemply methods. When LuxR protein is present, the Quorum Sensing responsible small molecule AHL (Acyl-homoserine-lactone) binds forming the heterodimer (LuxR.AHL), which subsequently dimerizes as the heterotetramer (LuxR.AHL)2 (Boada et al, 2017) as shown in Figure 2. This complex is the active transcription factor that represses this synthetic repressible promoter PluxR designed in (Egland and Greenberg, 2000).

LuxR represible promoter and QS.
Figure 2. Schema of the LuxR promoter functioning.

This part can be combined with other compatible parts from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Valencia UPV IGEM 2018 Printeria Collection] to assemble transcriptional units with the Golden Gate assembly protocol .

In order characterize this promoter we constructed the composite part BBa_K2656116 using the following RBS, CDS and terminator:

  • RBS BBa_K2656009: the B0030 RBS in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]
  • CDS BBa_K2656022: the E0040 GFPmut3b sequence in its Golden Braid standardized version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]
  • Terminator BBa_K2656026: the B0015 transcriptional terminator in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]

By using this [http://2018.igem.org/Team:Valencia_UPV/Experiments#exp_protocol experimental protocol] and inducing at different AHL concentrations, we have obtained the following experimental measures (in blue dots). This measurements were compared with our [http://2018.igem.org/Team:Valencia_UPV/Modeling#models constitutive AHL-LuxR model] to test it.

AHL experiment.
Figure 3. AHL induction experiment and comparison with our model simulation.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]